Nextstrain build for mpox virus
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Updated
May 16, 2024 - Python
Nextstrain build for mpox virus
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Nextstrain build for novel coronavirus SARS-CoV-2
SARS-CoV-2 variant growth rates and frequency forecasts
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
Spike-only SARS-CoV-2 Nextstrain build
BA.2.86 project with Sigal lab
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
interactive maximum-likelihood phylogenies for SARS-CoV-2 genomes and variants of concern from Bangladesh
Parallelization of Nextstrain builds and parameter testing using Nextflow
Repository for Allergy Immunology and Cell Biology Unit (AICBU), University of Sri Jayewardenepura, Sri Lanka.
Nextstrain build configuration for maintaining https://nextstrain.org/community/aicbu/ncov/srilanka
Collective list of active repositories providing tracking as well as datasets to defeat and restrict the widespread of Novel CoronaVirus
gentoo portage overlay for nextstrain.org/ncov building.
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