Spike-only SARS-CoV-2 Nextstrain build

This repository contains the code to build a Nextstrain build using only the Spike protein of SARS-CoV-2.

View the tree at https://nextstrain.org/groups/neherlab/ncov/spike-only

Usage

nextstrain build .

(At time of writing I still need to add yq to the Nextstrain conda environment)