nextstrain / nextclade Star 200 Code Issues Pull requests Discussions Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement science research virus sequencing next-generation-sequencing dna rna influenza sequences strain nextstrain ncov coronavirus covid-19 covid covid19 sars-cov-2 neherlab clades clade Updated May 17, 2024 TypeScript
nextstrain / ncov-clades-schema Star 9 Code Issues Pull requests Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain phylogenetics nextstrain sars-cov-2 clades Updated Apr 22, 2024 JavaScript
abichat / yatah Star 6 Code Issues Pull requests Yet Another TAxonomy Handler. taxonomy clades Updated Apr 13, 2024 R
nextstrain / flu_frequencies Star 3 Code Issues Pull requests Flu clade and mutation frequencies mutations influenza flu clades Updated May 14, 2024 TypeScript
maxbiostat / cladeCorrelation Star 0 Code Issues Pull requests Code for calculating correlations between clade indicators. biostatistics phylogenetics correlation-matrices clades Updated Jul 17, 2023 R
karubiotools / hsp60ECCtool Star 0 Code Issues Pull requests This script allows to get Enterobacter cloacae complex hsp60 cluster from a multi-Fasta file bioinformatics genomics clades enterobacter Updated Nov 8, 2021 Perl