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Nextstrain build for novel coronavirus SARS-CoV-2
Python 1.4k 406
Pipeline components for real-time phylodynamic analysis
Python 262 128
Web app for visualizing pathogen evolution
JavaScript 288 160
Nextstrain shared infrastructure
Nextstrain build for avian influenza viruses
Nextstrain build for dengue virus
Shared internal tooling for pathogen data ingest. Used by our pathogen build repos.
The Nextstrain website
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
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