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CI: Add new core pathogens to pathogen-build-ci
#1703
opened Dec 20, 2024 by
joverlee521
4 of 5 tasks
Inconsistency of lengths and mutations assigned to branches that are children of the root.
bug
Something isn't working
#1689
opened Nov 25, 2024 by
rneher
Remove New feature or request
authors hard-coding in augur export
enhancement
#1685
opened Nov 20, 2024 by
genehack
Support Python 3.13
blocked
Dependent on external development
enhancement
New feature or request
#1679
opened Nov 14, 2024 by
corneliusroemer
Add internal changes to changelog to improve visibility for developers and give credit
proposal
Proposals that warrant further discussion
#1673
opened Nov 12, 2024 by
corneliusroemer
Replace use of internal, non-public pandas API in parse.fix_dates
#1670
opened Nov 10, 2024 by
corneliusroemer
parse: crash on invalid dates "0", "99999" instead of handling gracefully as intended
bug
Something isn't working
#1669
opened Nov 10, 2024 by
corneliusroemer
Missing escape of square brackets causes diff_jsons.py in some cram tests to be false negative
bug
Something isn't working
#1665
opened Nov 9, 2024 by
corneliusroemer
Validation regex pattern for Something isn't working
please take this issue
Extra attention is needed
branch_label display default values in Auspice config JSON is too strict
bug
#1661
opened Nov 7, 2024 by
huddlej
CLI help text can't contain rST section headings
documentation
Improvements or additions to documentation
#1657
opened Oct 23, 2024 by
victorlin
Gff3 file: differences between nextclade datasets and augur ancestral
documentation
Improvements or additions to documentation
#1655
opened Oct 21, 2024 by
anna-parker
Improve help text of CLI options that use Improvements or additions to documentation
extend and ExtendOverwriteDefault actions
documentation
#1654
opened Oct 17, 2024 by
joverlee521
curate apply-geolocation-rules: Allow rule overrides
enhancement
New feature or request
#1648
opened Oct 3, 2024 by
joverlee521
Add examples for weighted sampling with multiple columns including month/week
documentation
Improvements or additions to documentation
#1645
opened Sep 25, 2024 by
victorlin
Also accept "region" as synonym of "source" for gb files?
enhancement
New feature or request
#1643
opened Sep 25, 2024 by
corneliusroemer
augur merge is slow to read in metadata
enhancement
#1628
opened Sep 10, 2024 by
tsibley
2 tasks
Release: changelog can be out-of-sync
bug
Something isn't working
#1620
opened Sep 3, 2024 by
victorlin
merge: Import metadata files concurrently?
enhancement
New feature or request
#1617
opened Sep 3, 2024 by
tsibley
Align fractional sequences per group conversion methods
proposal
Proposals that warrant further discussion
#1614
opened Aug 29, 2024 by
victorlin
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