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Pull requests: nextstrain/augur

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fix(tests): Fix false negative cram tests
#1666 opened Nov 9, 2024 by corneliusroemer Loading…
4 tasks done
CLI: Use raw descriptions
#1641 opened Sep 24, 2024 by victorlin Draft
5 tasks
Register subparsers recursively
#1640 opened Sep 24, 2024 by victorlin Draft
2 of 5 tasks
filter: Deprecate --output and -o
#1622 opened Sep 4, 2024 by victorlin Loading…
4 tasks done
merge: Support sequences with cross-checking
#1601 opened Aug 27, 2024 by victorlin Loading…
3 of 5 tasks
chore(deps): configure dependabot for pip deps
#1538 opened Jul 11, 2024 by corneliusroemer Loading…
4 tasks
chore(deps): allow numpy v2
#1533 opened Jul 11, 2024 by corneliusroemer Draft
4 tasks
export multiple trees
#1450 opened Apr 24, 2024 by jameshadfield Loading…
2 tasks
filter: Split filtering and subsampling
#1432 opened Mar 7, 2024 by victorlin Draft
3 tasks
filter: Improve help text
#1430 opened Mar 5, 2024 by victorlin Draft
2 of 3 tasks
feat(mask): allow empty mask file, warn not error
#1287 opened Aug 19, 2023 by corneliusroemer Loading…
1 task done
feat(mask): Add --mask-gaps {all,terminals} option
#1286 opened Aug 19, 2023 by corneliusroemer Loading…
2 tasks done
Feat/parse nextclade annotation
#1263 opened Jul 26, 2023 by rneher Loading…
1 task
filter: Rewrite using SQLite3
#1242 opened Jun 17, 2023 by victorlin Draft
1 of 7 tasks
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