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@hodcroftlab

Hodcroft Lab (EVE)

The Epidemiology & Virus Evolution (EVE) Group at Swiss TPH!

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  1. covariants covariants Public

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Python 320 111

  2. evd68_demo evd68_demo Public

    Demo files for EVD68 build

  3. enterovirus_a71 enterovirus_a71 Public

    Code to EV-A71 build on nextstrain.org

    Python

  4. coxsackievirus_a6 coxsackievirus_a6 Public

    Code for Coxsackievirus A6 build on nextstrain.org

    Python

  5. poliovirus_recombination poliovirus_recombination Public

    Phylogenetics and recombination analysis of Enterovirus C with a focus on vaccine-derived polioviruses

    Python

  6. coxsackievirus_a16 coxsackievirus_a16 Public

    Python

Repositories

Showing 10 of 11 repositories
  • template_nextstrain Public template

    Template for building your own Nextstrain workflow

    hodcroftlab/template_nextstrain’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • covariants Public

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    hodcroftlab/covariants’s past year of commit activity
    Python 320 AGPL-3.0 111 78 (5 issues need help) 20 Updated Mar 12, 2025
  • ppx-plots Public

    Plots of Pathoplexus data

    hodcroftlab/ppx-plots’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 12, 2025
  • enterovirus_a71 Public

    Code to EV-A71 build on nextstrain.org

    hodcroftlab/enterovirus_a71’s past year of commit activity
    Python 0 0 0 0 Updated Mar 11, 2025
  • compare-alignments Public

    Guide of comparing alignments made by different methods/parameters

    hodcroftlab/compare-alignments’s past year of commit activity
    Python 0 0 0 0 Updated Mar 11, 2025
  • poliovirus_recombination Public

    Phylogenetics and recombination analysis of Enterovirus C with a focus on vaccine-derived polioviruses

    hodcroftlab/poliovirus_recombination’s past year of commit activity
    Python 0 0 0 1 Updated Mar 11, 2025
  • coxsackievirus_a16 Public
    hodcroftlab/coxsackievirus_a16’s past year of commit activity
    Python 0 0 0 0 Updated Mar 5, 2025
  • coxsackievirus_a6 Public

    Code for Coxsackievirus A6 build on nextstrain.org

    hodcroftlab/coxsackievirus_a6’s past year of commit activity
    Python 0 0 0 0 Updated Mar 5, 2025
  • nextclade_d68 Public
    hodcroftlab/nextclade_d68’s past year of commit activity
    Python 0 0 0 0 Updated Mar 4, 2025
  • hodcroftlab Public

    Website for hodcroft lab

    hodcroftlab/hodcroftlab’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 5, 2025
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