Nextstrain build for novel coronavirus SARS-CoV-2
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Updated
May 20, 2024 - Python
Nextstrain build for novel coronavirus SARS-CoV-2
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Nextstrain build for mpox virus
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
SARS-CoV-2 variant growth rates and frequency forecasts
BA.2.86 project with Sigal lab
Parallelization of Nextstrain builds and parameter testing using Nextflow
gentoo portage overlay for nextstrain.org/ncov building.
Repository for Allergy Immunology and Cell Biology Unit (AICBU), University of Sri Jayewardenepura, Sri Lanka.
interactive maximum-likelihood phylogenies for SARS-CoV-2 genomes and variants of concern from Bangladesh
Nextstrain build configuration for maintaining https://nextstrain.org/community/aicbu/ncov/srilanka
Collective list of active repositories providing tracking as well as datasets to defeat and restrict the widespread of Novel CoronaVirus
Spike-only SARS-CoV-2 Nextstrain build
Add a description, image, and links to the nextstrain topic page so that developers can more easily learn about it.
To associate your repository with the nextstrain topic, visit your repo's landing page and select "manage topics."