Skip to content

@samtools samtools

Change the repository type filter

All

    Repositories list

    15 repositories

    • samtools

      Public
      Tools (written in C using htslib) for manipulating next-generation sequencing data
      C
      •
      Other
      •610•1.9k•176•23•Updated Feb 26, 2026Feb 26, 2026

    • htsjdk

      Public
      A Java API for high-throughput sequencing data (HTS) formats.
      javagenomicsngssequencingsamvcfdnajava-apifastabam
      Java
      •241•296•274•43•Updated Feb 25, 2026Feb 25, 2026

    • hts-specs

      Public
      Specifications of SAM/BAM and related high-throughput sequencing file formats
      TeX
      •179•701•185•35•Updated Feb 24, 2026Feb 24, 2026

    • bcftools

      Public
      This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/i…
      C
      •
      Other
      •265•846•347•12•Updated Feb 16, 2026Feb 16, 2026

    • htslib

      Public
      C library for high-throughput sequencing data formats
      bioinformaticsngssamvcfbamhtslibbcfcram
      C
      •
      Other
      •462•910•136•26•Updated Feb 6, 2026Feb 6, 2026

    • htscodecs

      Public
      Custom compression for CRAM and others.
      C
      •
      Other
      •20•37•0•0•Updated Feb 3, 2026Feb 3, 2026

    • www.htslib.org

      Public
      The http://www.htslib.org/ web site
      HTML
      •13•8•3•0•Updated Dec 16, 2025Dec 16, 2025

    • c-maint

      Public
      Maintenance scripts used with the htslib/samtools/bcftools repositories
      Perl
      •
      Other
      •3•3•0•1•Updated Dec 9, 2025Dec 9, 2025

    • htslib-crypt4gh

      Public
      HTSlib crypt4gh plug-in
      C
      •
      Other
      •2•3•1•0•Updated Sep 22, 2023Sep 22, 2023

    • klib

      Public
      A standalone and lightweight C library
      C
      •
      MIT License
      •585•0•0•0•Updated Jan 17, 2023Jan 17, 2023

    • samtools.github.com

      Public
      The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites
      CSS
      •1•4•0•0•Updated Dec 23, 2021Dec 23, 2021

    • tabix

      Public archive
      Note: tabix and bgzip binaries are now part of the HTSlib project.
      C
      •38•90•5•2•Updated Aug 3, 2021Aug 3, 2021

    • htslib-plugins

      Public
      Plugins for use with HTSlib
      C
      •
      Other
      •8•9•3•0•Updated Mar 19, 2021Mar 19, 2021

    • htsjdk-next-beta

      Public
      Staging ground for the development of the next major version of HTSJDK
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •3•6•21•10•Updated Mar 4, 2019Mar 4, 2019

    • sapi

      Public
      Sequence Alignment Programming Interface
      C
      •0•7•0•0•Updated Mar 9, 2012Mar 9, 2012