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Pull requests: samtools/hts-specs

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Pull requests list

Fix for #860 - Modify URL so that it is actually invalid.
#861 opened Jul 25, 2026 by markwoon Loading…
Relax MM tag regexp sam-tags
#859 opened Jul 7, 2026 by jkbonfield Contributor Loading…
1
4
Further clarify ITF-8 and LTF-8 encodings cram
#858 opened Jul 7, 2026 by jkbonfield Contributor Loading…
1
5
Add VCFTEXT format keyword and clarify whether VCF responses are compressed htsget
#856 opened May 19, 2026 by jmarshall Member Loading…
2
Vcf/gvcf example fix vcf
#853 opened Feb 24, 2026 by d-cameron Contributor Loading…
1
4
Clarify GQ vcf
#852 opened Feb 24, 2026 by d-cameron Contributor Loading…
1
1
Clarified INFO END deprecation status vcf
#844 opened Sep 9, 2025 by d-cameron Contributor Loading…
5
Minor CRAM notation suggestion: Use IEC-style MiB notation for powers of two, rather than MB cram
#841 opened Aug 12, 2025 by jmarshall Member Loading…
5
Add succinct description of refget sequence collection in metadata vcf
#832 opened Jun 18, 2025 by tcezard Contributor • Draft
2
Remove refget from hts-specs refget
#830 opened Jun 2, 2025 by andrewyatz Contributor Loading…
feat: add proof of concept solution for #814 sam sam-tags
#815 opened Feb 17, 2025 by yfarjoun Contributor • Draft
feat: add tags related to optical duplicates. sam sam-tags
#813 opened Feb 16, 2025 by yfarjoun Contributor Loading…
7
Add encryptionScheme parameter to htsget htsget
#808 opened Feb 3, 2025 by brainstorm Contributor Loading…
16
Copy the tag type text from SAM spec to SAMtags (PR #804) sam sam-tags
#804 opened Jan 7, 2025 by jkbonfield Contributor Loading…
1
5
Explicitly permit eg N+m in MM tag (PR#799) sam sam-tags
#799 opened Oct 28, 2024 by jkbonfield Contributor Loading…
1
4
fix discrepancy of empty bed files bed
#775 opened Jun 28, 2024 by kloetzl Contributor Loading…
5
Add SAM recommendation of MAPQ=0 for unmapped reads sam
#753 opened Jan 29, 2024 by jkbonfield Contributor Loading…
1
@jmarshall
6
Adding AEAD support as new encryption method crypt4gh
#736 opened Jul 22, 2023 by silverdaz Loading…
5
Allow for UTF-8 field values in header regular expression sam
#726 opened May 12, 2023 by jmarshall Member Loading…
1
11
Fix typos (refget) refget
#700 opened Feb 2, 2023 by jkbonfield Contributor Loading…
Remove "top strand" phrase from MM tag description. sam sam-tags
#668 opened Aug 31, 2022 by jkbonfield Contributor Loading…
1
@jmarshall
1
Define optional HTTP 426 response for requests for index files htsget
#665 opened Aug 3, 2022 by jmarshall Member Loading…
Clarify MI for identifying source molecule strand sam sam-tags
#633 opened Mar 2, 2022 by nh13 Member Loading…
@jmarshall
15
Clarification of empty vector representation vcf
#617 opened Dec 16, 2021 by pd3 Member Loading…
@d-cameron
3
Phred scale clarifications sam vcf
#579 opened Jun 16, 2021 by jkbonfield Contributor Loading…
1
19
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