Search results

Error in VCF test files

Status: Open.

#860 In samtools/hts-specs;

· markwoon opened on Jul 25, 2026

rlen calculation in bcf/vcf

vcf

Status: Open.

#857 In samtools/hts-specs;

· vasudeva8 opened on May 29, 2026

ITF-8/LTF-8 spec text has typos, an incorrect prefix description, and lacks examples

Status: Open.

#855 In samtools/hts-specs;

· yfarjoun opened on Mar 31, 2026

Update MM tag regex to include upper case "Ambiguity codes"

Status: Open.

#854 In samtools/hts-specs;

· cmdcolin opened on Mar 27, 2026

Missing value for SVCLAIM in DEL/DUP in VCFv4.4: clarification and addition

vcf

Status: Open.

#849 In samtools/hts-specs;

· khetherin opened on Jan 19, 2026

Is the set of ##ALT top-level types in IDs *really* restricted to the 5 provided?

vcf

Status: Open.

#848 In samtools/hts-specs;

· adamnovak opened on Jan 15, 2026

how to index a read in a circular sequence?

sam

Status: Open.

#847 In samtools/hts-specs;

· yfarjoun opened on Dec 18, 2025

A molecular-annotation-spec for SAM/BAM/CRAM with new reserved tags

sam

sam-tags

Status: Open.

#846 In samtools/hts-specs;

· mrvollger opened on Nov 20, 2025

Fix explaination of BS data series in CRAM

cram

Status: Open.

#845 In samtools/hts-specs;

· jkbonfield opened on Oct 23, 2025

TLEN meaning when leftmost and rightmost are the same for a pair, or the same for a single record

cram

sam

Status: Open.

#842 In samtools/hts-specs;

· jkbonfield opened on Sep 3, 2025

htsget: using htsget server to mask regions from users (i.e clinical usecase(s))

htsget

Status: Open.

#838 In samtools/hts-specs;

· brainstorm opened on Aug 6, 2025

htsget: spec should indicate (dictate?) whether .vcf.gz is preferred (mandatory?) over plaintext .vcf?

htsget

Status: Open.

#837 In samtools/hts-specs;

· brainstorm opened on Aug 6, 2025