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Pull requests: samtools/bcftools

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Pull requests list

Make the mpileup BAM_CREF_SKIP filter optional.
#2282 opened Sep 17, 2024 by jkbonfield Loading…
1
Remove the mpileup BAM_CREF_SKIP filter.
#2281 opened Sep 17, 2024 by jkbonfield Loading…
1
2
Check fclose(stdout) at the end of main() [and miscellanea]
#2046 opened Nov 27, 2023 by jmarshall • Draft
average(FORMAT/GQ) for vcfstats
#1941 opened Jun 9, 2023 by lindenb Loading…
1
Support for telomere (POS=0) coordinate
#1875 opened Mar 1, 2023 by pd3 Loading…
New mpileup2 draft (intended for discussions, not ready to merge!)
#1842 opened Jan 3, 2023 by pd3 Loading…
Make --indel-bias more sensitive to indels
#1648 opened Jan 28, 2022 by pd3 Loading…
6
Fix vcf-merge when using COLLAPSE_NONE
#1624 opened Dec 8, 2021 by starskyzheng Loading…
1
Move regidx code to htslib
#865 opened Aug 14, 2018 by pd3 Loading…
plugin: new validate plugin: check GT indexes
#448 opened Jun 21, 2016 by mcshane Loading…
Fix GT splitting in bcftools norm D1: Difficult enhancement P2: Desirable
#344 opened Oct 28, 2015 by jpiper Loading…
6
ProTip! Exclude everything labeled bug with -label:bug.