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Refine grenepipe log header CI #142: Commit 95c91ef pushed by lczech
June 24, 2025 14:21 17m 15s dev
dev
June 24, 2025 14:21 17m 15s
Remove rule group from bam index rule. CI #141: Commit 71d7ba7 pushed by lczech
June 19, 2025 17:05 32m 53s dev
dev
June 19, 2025 17:05 32m 53s
Make freebayes vcf temp instead of pipe CI #140: Commit 0d55606 pushed by lczech
June 16, 2025 15:35 35m 40s dev
dev
June 16, 2025 15:35 35m 40s
Workaround for single-three freebayes issue CI #139: Commit e1699a6 pushed by lczech
June 14, 2025 19:40 31m 39s dev
dev
June 14, 2025 19:40 31m 39s
Fix for Ensembl VEP cache changing their file paths CI #138: Commit 37706cb pushed by lczech
June 14, 2025 17:36 36m 50s dev
dev
June 14, 2025 17:36 36m 50s
Refine freebayes multi file command line passing CI #137: Commit 86b8e23 pushed by lczech
June 11, 2025 15:22 35m 46s dev
dev
June 11, 2025 15:22 35m 46s
Fix bam mappings table pandas element access bug CI #136: Commit 84f303c pushed by lczech
May 9, 2025 20:10 30m 36s dev
dev
May 9, 2025 20:10 30m 36s
Test CI with conda and mamba CI #135: Commit 7cb7291 pushed by lczech
May 7, 2025 15:55 34m 53s dev
dev
May 7, 2025 15:55 34m 53s
Fix GitHub CI to switch to conda CI #134: Commit a5b279a pushed by lczech
May 7, 2025 14:07 40m 4s dev
dev
May 7, 2025 14:07 40m 4s
Fix python named argument bug in resource function CI #133: Commit 8123c4f pushed by lczech
May 7, 2025 04:18 25m 21s dev
dev
May 7, 2025 04:18 25m 21s
Run snakefmt to destroy the formatting CI #132: Commit 135b193 pushed by lczech
May 5, 2025 22:46 13m 47s dev
dev
May 5, 2025 22:46 13m 47s
Add GATK GenomicsDBImport sharding for speedup CI #131: Commit fbf30f6 pushed by lczech
May 5, 2025 21:37 31m 43s dev
dev
May 5, 2025 21:37 31m 43s
Refine resource specifications based on empirical experience CI #130: Commit 2be3468 pushed by lczech
April 25, 2025 19:04 39m 36s dev
dev
April 25, 2025 19:04 39m 36s
Fix rule thread assignment at parse time CI #129: Commit 6c7be52 pushed by lczech
April 25, 2025 16:06 11m 3s dev
dev
April 25, 2025 16:06 11m 3s
Try fixing GitHub CI missing dependency for VEP CI #128: Commit 3e43481 pushed by lczech
April 24, 2025 21:32 43m 12s dev
dev
April 24, 2025 21:32 43m 12s
Refactor and simplify resources configuration CI #127: Commit 8943aeb pushed by lczech
April 24, 2025 20:58 34m 58s dev
dev
April 24, 2025 20:58 34m 58s
Refactor and simplify resources configuration CI #126: Commit 84eac51 pushed by lczech
April 24, 2025 20:56 2m 54s dev
dev
April 24, 2025 20:56 2m 54s
Release v0.15.0 CI #125: Commit 53912b0 pushed by lczech
March 27, 2025 15:49 42m 19s master
master
March 27, 2025 15:49 42m 19s
Update freebayes to 1.3.9, trying to fix freebayes/freebayes#764 CI #124: Commit 8192a09 pushed by lczech
March 27, 2025 15:31 42m 42s dev
dev
March 27, 2025 15:31 42m 42s
Minor print refinement in tool script CI #123: Commit 3e5fd32 pushed by lczech
March 27, 2025 13:54 38m 24s dev
dev
March 27, 2025 13:54 38m 24s
Minor refinement in benchmark plot script CI #122: Commit e54bc49 pushed by lczech
February 24, 2025 13:43 12m 41s master
master
February 24, 2025 13:43 12m 41s
Minor refinement in benchmark plot script CI #121: Commit e54bc49 pushed by lczech
February 24, 2025 13:43 1m 16s dev
dev
February 24, 2025 13:43 1m 16s
Add script to collect and plot benchmarks CI #120: Commit 57da64c pushed by lczech
February 24, 2025 01:22 12m 42s dev
dev
February 24, 2025 01:22 12m 42s
Clean up contig group rules and functions CI #119: Commit c933a09 pushed by lczech
February 24, 2025 00:40 42m 43s dev
dev
February 24, 2025 00:40 42m 43s
Add max contigs per group option CI #118: Commit 758b8ca pushed by lczech
February 23, 2025 22:00 40m 39s master
master
February 23, 2025 22:00 40m 39s