Skip to content
CI

Refactor and simplify resources configuration #126

Sign in to view logs

Refactor and simplify resources configuration

Refactor and simplify resources configuration #126

Triggered via push April 24, 2025 20:56
@lczechlczech
pushed 84eac51
dev
Status Cancelled
Total duration 2m 54s
Artifacts 52

ci.yaml

on: push
Matrix: envs
Matrix: example
Matrix: test
Fit to window
Zoom out
Zoom in

Annotations

66 errors
test (ubuntu-22.04, base)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-4, mamba)
Process completed with exit code 1.
test (ubuntu-24.04, base)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-6, mamba)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bowtie2-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mappings-table, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bowtie2-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-7, mamba)
Process completed with exit code 1.
test (ubuntu-latest, download, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-cutadapt-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-aln-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-none, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, base, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-5, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, pileup-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-cutadapt-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-2, mamba)
Process completed with exit code 1.
envs (macos-13, micromamba)
The run was canceled by @lczech.
envs (macos-13, micromamba)
ENOENT: no such file or directory, lstat '/Users/runner/work/_temp/setup-micromamba/micromamba-shell'
envs (macos-13, micromamba)
The operation was canceled.
envs (macos-13, mamba)
The run was canceled by @lczech.
envs (macos-13, mamba)
ENOENT: no such file or directory, lstat '/Users/runner/work/_temp/setup-micromamba/micromamba-shell'
envs (macos-13, mamba)
The operation was canceled.
test (macos-13, base)
The run was canceled by @lczech.
test (macos-13, base)
The operation was canceled.
test (macos-13, base)
Process completed with exit code 1.
test (macos-13, base)
ENOENT: no such file or directory, lstat '/Users/runner/work/_temp/setup-micromamba/micromamba-shell'
envs (ubuntu-24.04, mamba)
The run was canceled by @lczech.
envs (ubuntu-24.04, mamba)
The operation was canceled.
envs (ubuntu-22.04, mamba)
The run was canceled by @lczech.
envs (ubuntu-22.04, mamba)
The operation was canceled.
envs (ubuntu-22.04, micromamba)
The run was canceled by @lczech.
envs (ubuntu-22.04, micromamba)
The operation was canceled.
envs (ubuntu-24.04, micromamba)
The run was canceled by @lczech.
envs (ubuntu-24.04, micromamba)
The operation was canceled.

Artifacts

Produced during runtime
Name Size Digest
logs-example-macos-13 Expired
611 Bytes
sha256:20e6a5a08a1665c1032a0ba04e4989a03e9c530754131b700871664b2237650c
logs-example-ubuntu-22.04 Expired
606 Bytes
sha256:146cebbfcd2ed9095f1403036b88dddc3f54d1cfa9f5e41930805484a9e1c84a
logs-example-ubuntu-24.04 Expired
606 Bytes
sha256:f44e4f62e018805930d8a050d8b30fb2f0a7adbc5c79df6beab9863af634868b
logs-test-macos-13-base Expired
283 Bytes
sha256:b92b5c8cbe566d901ffdebd0e7240270f78ce19e76b85ff1e11c670333c7d8ca
logs-test-ubuntu-22.04-base Expired
20 KB
sha256:ed292f7a90a06919ff4d3c1af67e84e03710ea18aa48719e7e89b373fc1e484f
logs-test-ubuntu-24.04-base Expired
20 KB
sha256:99fc49fc3356cb171f322774b638053aa46b4363b83e4847c53ce10c5c76a276
logs-test-ubuntu-latest-base Expired
20 KB
sha256:706bdcdde44deeabb9216ccf0273d6d35f01729566be274b1a1f5e5eab697dca
logs-test-ubuntu-latest-calling-bcftools-1 Expired
20.1 KB
sha256:a73167c89f56191daa55c8200b7aee569512811b6954e6fa01afc0226a31da2b
logs-test-ubuntu-latest-calling-bcftools-2 Expired
20.1 KB
sha256:4e7fd89db0b0e23c9cc8933653e92da8ee6cd7ca0254d500a3a2cbe973ffee1c
logs-test-ubuntu-latest-calling-bcftools-3 Expired
20.1 KB
sha256:3e6abdbbc82c3a76e0089e397544881dfb4ca5394e09cdd69773383f693cb04a
logs-test-ubuntu-latest-calling-bcftools-4 Expired
20.1 KB
sha256:400719320cae055b16975e00701bfe9cd50d6e1b1f617d3f2da2df708a49d827
logs-test-ubuntu-latest-calling-freebayes-1 Expired
20.1 KB
sha256:a6d401be31ec93665a189a3c9989d6195d4ed2d6ef9dd04cce58784800c42d66
logs-test-ubuntu-latest-calling-freebayes-2 Expired
20.1 KB
sha256:0ed72f535fa085e5439b89188c6e80ace30a8d7c5f11466f4283685124858d90
logs-test-ubuntu-latest-calling-freebayes-3 Expired
20.1 KB
sha256:ffc9e03fa31f2c197269b076891b88bfa921b288d9f12442006b15dd653254dc
logs-test-ubuntu-latest-calling-haplotypecaller-1 Expired
20.2 KB
sha256:4455e03e1742c734ac771625d8af4d1b2f3b34392952d41241c4c34446b15ba9
logs-test-ubuntu-latest-calling-haplotypecaller-2 Expired
20.2 KB
sha256:2cb209189475441bc76d69c9eb5c3f42be90bd9dbf772387c271acdda82584a2
logs-test-ubuntu-latest-calling-haplotypecaller-3 Expired
20.1 KB
sha256:1e45d44b2e8f5f28e21568d6f3731a925680c0654f7c725620535e433adca833
logs-test-ubuntu-latest-calling-haplotypecaller-4 Expired
20.1 KB
sha256:ef1dc2e698283b7520d819471b958eb4482bf0c0290ae61e75b164c26e2f4f9c
logs-test-ubuntu-latest-calling-haplotypecaller-5 Expired
20.2 KB
sha256:5d463ef3daabcaab0b46e0bbe0df0f437115bc0dbbdfd732944c0193cae0fcb0
logs-test-ubuntu-latest-calling-haplotypecaller-6 Expired
20.2 KB
sha256:8b2165ccac3eed51d9b15a3b9efc2b14f9d0d542b6bd696c4f9f5ebf7b4df2c1
logs-test-ubuntu-latest-calling-haplotypecaller-7 Expired
20.2 KB
sha256:c3259b45be0300b6ef2ed84cf9248c8e624c88eb8e93865e1897209a5960d9c7
logs-test-ubuntu-latest-download Expired
20 KB
sha256:bca0b9693d88db91f28c620249199acf72e09686c215a2f49044f80fa50047cb
logs-test-ubuntu-latest-duplicates-dedup-1 Expired
20.1 KB
sha256:f4b73db6d50858649884ff2221e06061dcd9e38d28031760c1043cf2d08fe6c2
logs-test-ubuntu-latest-duplicates-dedup-2 Expired
20.1 KB
sha256:0bbbac6f2fd43cd222acfcde8204d2422ff601f80fb75692c7a2096cc6f21339
logs-test-ubuntu-latest-hafpipe-1 Expired
20.1 KB
sha256:aa037b26cb0514bf0a236ad80c2857c1899e2d68438cd17a6146dfaff0d0550a
logs-test-ubuntu-latest-hafpipe-2 Expired
20.1 KB
sha256:86b80b97553539f0c54cb39c9c9b6d8fb5f460b3d43021cf11135acfbbf620da
logs-test-ubuntu-latest-hafpipe-3 Expired
20.1 KB
sha256:1e0c28f5f9d7b733b4c4b01b87a8c0d21d37eaa1f07749da99ecbc9e23050f3b
logs-test-ubuntu-latest-hafpipe-4 Expired
20.1 KB
sha256:373d6f253c63b4925dab74c25158c9450644e00d99f07b7b1bb900db7cd93138
logs-test-ubuntu-latest-mapping-bowtie2-1 Expired
20.1 KB
sha256:596122f12e1eebd05ffc1f181da887fab2282de50744bc49d9dafff0a95d5289
logs-test-ubuntu-latest-mapping-bowtie2-2 Expired
20.1 KB
sha256:5945516bdcba7234670a7900d6811ac1c547cd02d2052a37fabdbc6b055de197
logs-test-ubuntu-latest-mapping-bwa-aln-1 Expired
20.1 KB
sha256:027bd9436cc60fbec9f86832bfcfeedde50d1dd9ca9fd6290693e7f26533aa30
logs-test-ubuntu-latest-mapping-bwa-aln-2 Expired
20.1 KB
sha256:62a59278e609515264de89ab46f2d03c81f771b512644af209c844b128f99618
logs-test-ubuntu-latest-mapping-bwa-aln-3 Expired
20.1 KB
sha256:b272a30cc998aaa8371a07847c1c41f231ea86431b78a2ff059c068edeecb2b2
logs-test-ubuntu-latest-mapping-bwa-aln-4 Expired
20.1 KB
sha256:ed380052c0c9d2695ddcaef6f71fd0c9cf47c4c9a814a2693371b022f3573e3c
logs-test-ubuntu-latest-mapping-bwa-mem-1 Expired
20.1 KB
sha256:ef5254a50898b24c17ebc6f2253d4a4f73e8ea9739850fac7f05c0056f8677ab
logs-test-ubuntu-latest-mapping-bwa-mem2-1 Expired
20.1 KB
sha256:483164f9079ae39d7c3e8480f86fb8114e0547b9b14e4cfb91f961ed4f47310a
logs-test-ubuntu-latest-mapping-bwa-mem2-2 Expired
20.1 KB
sha256:2db8e1e6bbd436c2a9f6bab01d2616a4fd50f33b487f482ac9952e75ef534970
logs-test-ubuntu-latest-mappings-table Expired
20.1 KB
sha256:3e674c05048824053d4f7fd18b037150cfaa752b1b326eca5ee5055b7961bda7
logs-test-ubuntu-latest-pileup-1 Expired
20 KB
sha256:937300fc71e04ce962effbee280e48d8d49d3735d589b7aa64f6dfc4437a1a3f
logs-test-ubuntu-latest-trimming-adapterremoval-1 Expired
20.2 KB
sha256:d516d9713fdcfceefb2a94d9a4f3c5370c3b2084b3386999ad076a17e27e9c0c
logs-test-ubuntu-latest-trimming-adapterremoval-2 Expired
20.2 KB
sha256:5dbef01ca56ed6cc2d69740fe869261fe4ccadbd172d8b2554c5d1c148d0342b
logs-test-ubuntu-latest-trimming-adapterremoval-3 Expired
20.2 KB
sha256:7894de5f0ccdde2681207c1406401e05be1d3affef22e9043ce1fd855d2b8359
logs-test-ubuntu-latest-trimming-cutadapt-1 Expired
20.1 KB
sha256:3f6e87b6bd44330ad83ca13fff6ec87d85c49c540a7bbbf9e3a2af04faf3b13d
logs-test-ubuntu-latest-trimming-cutadapt-2 Expired
20.1 KB
sha256:af866e02cf1abab404ce6559fad4b8e709cf80010cdec46e2b43120c8174eb31
logs-test-ubuntu-latest-trimming-fastp-1 Expired
20.1 KB
sha256:6632b533f811bd7bd57cb7a23e581909feb95809652a010aa94bf187bef613e9
logs-test-ubuntu-latest-trimming-fastp-2 Expired
20.1 KB
sha256:f554651b25b965dd77a845138f64201bc79dafa56349bb2bc3f414d09a360ea0
logs-test-ubuntu-latest-trimming-fastp-3 Expired
20.1 KB
sha256:1835ecd7059845ba6148b776b15a18a7171f3b36463d82846211c28d095cfe00
logs-test-ubuntu-latest-trimming-none Expired
20.1 KB
sha256:390d2a16cc368e7a479c3d60af83ef2751fa8881276965babf27b688a9333953
logs-test-ubuntu-latest-trimming-seqprep-1 Expired
20.1 KB
sha256:fd1d246d493134656b7cbf9610cdaed09134a5e640d493130fb3f7814ce521a9
logs-test-ubuntu-latest-trimming-seqprep-2 Expired
20.1 KB
sha256:f1b136e694d9d2aa3a89eff9861c18c5f79752c5bf98806a020f9dd6de6c7d4e
logs-test-ubuntu-latest-trimming-skewer-1 Expired
20.1 KB
sha256:ae2d36e15e2a40cf22eb46e53e913423a50fe175ac9bb6dbc1d265c48d43aca9
logs-test-ubuntu-latest-trimming-skewer-2 Expired
20.1 KB
sha256:0862f0f4c0dd8e6be32f09ae015ff38b803c2253b40e80c4ff6d8dd7fd6663df