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Issues list

Train Augustus and Train Snap need more flexibility in handling annotation data enhancement
#6623 opened Dec 12, 2024 by wm75
2
Changes were made to volcano plot without changing the tool version, now workflows fail, please revert to version
#6620 opened Dec 11, 2024 by pcm32
1
8
Test release 24.2
#6617 opened Dec 10, 2024 by mvdbeek
1
Enhancement: Update Kallisto wrapper adding option to save stdout as a dataset for MultiQC use
#6610 opened Dec 4, 2024 by jennaj
fastp assigns incorrect datatypes to ouput files with enabled read merging
#6606 opened Dec 3, 2024 by igormakunin2
Small collection of GEM tools
#6597 opened Nov 30, 2024 by emikar
2
omamer datamanager broken
#6585 opened Nov 24, 2024 by bernt-matthias
7
Update to codeML?
#6582 opened Nov 21, 2024 by jaredbernard
New tool Addition: Panaroo tool request
#6581 opened Nov 21, 2024 by SaimMomin12
7
new tool request: metaMDBG tool request
#6578 opened Nov 20, 2024 by vgaysin1
is there a plan to upgrade r941_prom_hac_g360+g422 model to any of latest model soon?
#6547 opened Nov 11, 2024 by mthang
5
bcftools_consensus has duplicate mask options
#6546 opened Nov 10, 2024 by pvanheus
Request for clusterprofiler update
#6535 opened Nov 5, 2024 by nilchia
1
samtools_bam_to_cram does not store genome deltas
#6523 opened Nov 5, 2024 by alpapan
15
Updating RepeatMasker to 4.1.7.1
#6502 opened Oct 31, 2024 by SaimMomin12
Toolshed category typo
#6501 opened Oct 31, 2024 by nomadscientist
Goseq with custom gene-go-category term inputs = bad scientific outputs
#6500 opened Oct 30, 2024 by jennaj
hicBuildMatrix cannot take space-separated list for Sequence of the restriction site or Dangling sequence
#6505 opened Oct 30, 2024 by bskubi
1
8
BBDuk: fails on auto-uncompressed fastq with spaces in filenames.
#6495 opened Oct 28, 2024 by hexylena
1
[meta] updating old tools / python version pinning by default
#6488 opened Oct 25, 2024 by hexylena
2
Funannotate data manager links to BUSCOs are out of date
#6478 opened Oct 22, 2024 by martindemko
add fastplong tool request
#6469 opened Oct 20, 2024 by bgruening
1
reshape2: cast/melt require en_US.UTF-8, other assorted issues.
#6467 opened Oct 18, 2024 by hexylena
1
add FDSTools tool request
#6460 opened Oct 16, 2024 by bgruening
Request: Consider including additional command line parameters on BBduk wrapped tool form
#6448 opened Oct 10, 2024 by jennaj
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