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Pull requests: galaxyproject/tools-iuc

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373 Open 6,229 Closed
373 Open 6,229 Closed
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Pull requests list

Adding recount3
#8008 opened May 20, 2026 by Ishikaarora13 • Draft
3 of 5 tasks
2
concoct use bai from metadata
#8007 opened May 20, 2026 by bernt-matthias Contributor Loading…
3 of 5 tasks
Add spaCy NLP tool and data manager
#8006 opened May 20, 2026 by ksuderman Loading…
5 tasks done
Add Stanford CoreNLP tool and data manager
#8005 opened May 20, 2026 by ksuderman Loading…
6 tasks done
Add Stanza NLP tool and data manager
#8004 opened May 20, 2026 by ksuderman Loading…
5 tasks done
8
Add entity geocoding tool
#8003 opened May 20, 2026 by ksuderman Loading…
5 tasks done
6
Add co-occurrence analysis tool
#8002 opened May 20, 2026 by ksuderman Loading…
4 tasks done
8
Add VADER sentiment analysis tool
#8001 opened May 19, 2026 by ksuderman Loading…
21
Update mapseq DM
#8000 opened May 19, 2026 by RZ9082 Member Loading…
2 of 5 tasks
Updating tools/diamond from version 2.1.25 to 2.2.0
#7990 opened May 18, 2026 by gxydevbot Collaborator Loading…
Gtdbtk update and make it actually work
#7987 opened May 14, 2026 by bgruening Member Loading…
3
hifiasm: fix --primary output, --hg-size decimals, test typos, modern profile
#7985 opened May 13, 2026 by alpapan Loading…
1 of 4 tasks
8
Update gtdbtk
#7983 opened May 11, 2026 by paulzierep Contributor Loading…
3 of 5 tasks
9
picrust2 update
#7971 opened May 10, 2026 by bgruening Member Loading…
5 tasks
1
Add proseg tool v3.1.1 for high-speed cell segmentation
#7969 opened May 8, 2026 by Biochem-50 Loading…
3 of 5 tasks
23
Add CountESS tool
#7967 opened May 8, 2026 by PlushZ Contributor Loading…
3 of 5 tasks
8
New and updated Bioconductor tooling for single-cell analysis
#7961 opened May 6, 2026 by kevinrue • Draft
5 tasks done
12
Updating tools/kmer2stats from version 1.0.1 to 1.0.3
#7952 opened May 4, 2026 by gxydevbot Collaborator Loading…
1
Update wfmash and test data
#7950 opened Apr 30, 2026 by RZ9082 Member • Draft
2 of 5 tasks
2
Fix: Prevent duplicate AMRFinderPlus database paths
#7949 opened Apr 30, 2026 by jakobnissen Contributor Loading…
3 of 5 tasks
15
IDR download: fix linter issues
#7944 opened Apr 28, 2026 by bernt-matthias Contributor Loading…
5 tasks
Updating tools/irma from version 1.2.0 to 1.3.3
#7928 opened Apr 27, 2026 by gxydevbot Collaborator Loading…
2
Updating tools/iqtree from version 2.4.0 to 3.1.1
#7927 opened Apr 27, 2026 by gxydevbot Collaborator Loading…
Add MAGs-visualization Galaxy wrappers
#7922 opened Apr 26, 2026 by alexandrah1704 Loading…
3 of 5 tasks
50
Taxonomic Update for obitools4 skip-version-check Allow IUC members to skip the version linter in PR reviews (use only for partially updated suites).
#7921 opened Apr 24, 2026 by kpayet26 Contributor Loading…
4 of 5 tasks
28
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