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'The termination flag is set, exiting' with docker version 'rnaseq-cgl-pipeline:3.2.1-1'

Status: Open.

#187 In BD2KGenomics/toil-rnaseq;

· zhenzhenyang-psu opened on Jul 13, 2022

SELinux?

Status: Open.

#186 In BD2KGenomics/toil-rnaseq;

· aubreybailey opened on Jun 16, 2021

bd2k version incompatibility between toil-rnaseq and s3am

Status: Open.

#182 In BD2KGenomics/toil-rnaseq;

· genec1 opened on Aug 17, 2020

quantification for stranded data

Status: Open.

#177 In BD2KGenomics/toil-rnaseq;

· yuankunzhu opened on Feb 19, 2019

Should PAR locus on the Y chromosome be removed in RSEM pipeline?

Status: Open.

#172 In BD2KGenomics/toil-rnaseq;

· wangshun1121 opened on Dec 18, 2018

Add explanation to FAQ regarding default kallisto indices

Status: Open.

#171 In BD2KGenomics/toil-rnaseq;

· jvivian opened on Dec 13, 2018

Swap out test sample for tests

Status: Open.

#166 In BD2KGenomics/toil-rnaseq;

· jvivian opened on Oct 30, 2018

Add BAM support to Docker wrapper

Status: Open.

#162 In BD2KGenomics/toil-rnaseq;

· jvivian opened on Oct 24, 2018

Ownership error with squashed outputs

Status: Open.

#142 In BD2KGenomics/toil-rnaseq;

· fcomitani opened on Jun 15, 2018

Look into adding Sphinx docs

Status: Open.

#127 In BD2KGenomics/toil-rnaseq;

· jvivian opened on Oct 25, 2017

Feeding own STAR parameters

Feature Request

Status: Open.

#119 In BD2KGenomics/toil-rnaseq;

· moeishihara opened on Oct 17, 2017