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16 Open 381 Closed
16 Open 381 Closed
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Issues list

Dependency on dustdas
#400 opened Jul 30, 2024 by anthony-aylward
Still need to implement backward match if fasta IDs are subset of gff IDs
#397 opened Apr 25, 2023 by hjjansen
4
Add lenient parser mode
#396 opened Jan 24, 2023 by alisandra
chromosomes can be longer than max string length in sqlite3 for a coordinate -> fix
#395 opened May 31, 2022 by alisandra
How to properly deal with RefSeq pseudogenes without transcript? bug Something isn't working question Further information is requested
#393 opened Apr 6, 2021 by soi
Properly handle non-coding genes database enhancement New feature or request
#392 opened Aug 27, 2020 by alisandra geenuff_paper
@alisandra
1
Export back to GFF3 enhancement New feature or request
#391 opened Aug 27, 2020 by alisandra geenuff_paper
@alisandra
Add Prokaryotic GFF Importer
#390 opened Aug 27, 2020 by alisandra geenuff_paper
Make sure import supports a few more common gff3 sources
#389 opened Aug 27, 2020 by alisandra
@alisandra
Use efficient _genome_query and join for everything using _super_locus_query database housekeeping
#356 opened Mar 20, 2020 by alisandra
@alisandra
Overlapping super locus error can be marked even if the individual transcript does not overlap bug Something isn't working database
#196 opened Nov 4, 2019 by soi
Error features for overlapping super loci are attached to the wrong transcript in some cases. bug Something isn't working database
#194 opened Oct 31, 2019 by soi
Add repeat/pseudogene/non-coding rna masks to Geenuff database enhancement New feature or request
#173 opened Oct 7, 2019 by soi
more validity checks on gff parsing bug Something isn't working
#122 opened Aug 26, 2019 by alisandra
4
Non-coding intron of gene without CDS not added to GeenuFF bug Something isn't working database
#109 opened Aug 20, 2019 by soi
Generate both gene statistics & sequences from GeenuFF db enhancement New feature or request
#96 opened Aug 7, 2019 by alisandra
@alisandra
1
ProTip! What’s not been updated in a month: updated:<2024-09-29.