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342 Open 7,691 Closed
342 Open 7,691 Closed
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Issues list

BuildNicheAssay on multiple samples, get niches named the same across samples, and filtering cells before building niches
#9509 opened Nov 25, 2024 by grindhej
Number of cell in SCTramsform()
#9505 opened Nov 22, 2024 by Chrisdoan9
PrepSCTIntegration Error in scale.data[anchor.features, ] : subscript out of limits bug Something isn't working
#9502 opened Nov 22, 2024 by marika300925
ProjectUMAP- 3D projection lacks accuracy
#9501 opened Nov 21, 2024 by andynkili
Export log2(TPM/10+1) values from Seurat
#9500 opened Nov 21, 2024 by Tina-Siqi
Requesting Seurat v4.9.9.9060
#9499 opened Nov 21, 2024 by Victor21v
1
Question about ImageDimPlot function
#9497 opened Nov 20, 2024 by lidd77
3
Potential Visual Artifact When Adjusting mols.size in ImageDimPlot
#9496 opened Nov 19, 2024 by sallyseullee-0821
Error in FindTransferAnchors with SCVI Integrated Reference and Query Dataset
#9495 opened Nov 19, 2024 by sallyseullee-0821
Comparing IntegrateData() and IntegrateLayers()
#9494 opened Nov 19, 2024 by luanamarinho
Error in .subscript.2ary(x, i, j, drop = drop): subscript out of bounds
#9492 opened Nov 18, 2024 by zhouliping718828
SpatialPlot issue: spot sizes within the slices are inconsistent bug Something isn't working
#9491 opened Nov 18, 2024 by onmyojiyys
Error using IntegrateLayers()
#9489 opened Nov 16, 2024 by sguttr
1
Unreliable value when using the future package bug Something isn't working
#9488 opened Nov 16, 2024 by AlbertoFabbri93
Error in SketchData() due to variable features bug Something isn't working
#9487 opened Nov 15, 2024 by calafell
Will executing the PCA and UMAP processes according to the cell type change the shape of the UMAP graph?
#9486 opened Nov 15, 2024 by TangBluebird
2
Error in SCTransform: Warning message: In size + sum(size_args, na.rm = FALSE) : NAs produced by integer overflow ( Similar to Issue #9316)
#9484 opened Nov 14, 2024 by JosephEDuke-Cohan
11
Issue in "Error in object[[assay]][] <- grp.cors: object of type 'S4' is not subsettable" as shown in spatial_vignette.Rmd because new Seurat assay required subset method documentation Error in documentation
#9483 opened Nov 14, 2024 by joesphbeller
Strong impact of number of ADT PCs on WNN UMAP?
#9482 opened Nov 14, 2024 by erflynn
1
FeaturePlot for spatial transcriptomics data does not work bug Something isn't working
#9481 opened Nov 14, 2024 by Yijia-Jiang
3
Problem with LoadXenium (+ self-fix that i need a sanity check on) and advice on labelling sample tissue microarray
#9474 opened Nov 12, 2024 by YfCem
Setting Expression Threshold for Molecule Visualization in ImageDimPlot
#9472 opened Nov 11, 2024 by sallyseullee-0821
1
DietSeurat doesn't drop layers from objects bug Something isn't working duplicate This issue or pull request already exists
#9464 opened Nov 8, 2024 by rharao
3
Is there a vignette/updated pipeline for Akoya qptiffs?
#9463 opened Nov 8, 2024 by salasd
Incorrect Layer Naming and Barcode Misalignment When Merging Seurat Objects Missing an Assay bug Something isn't working
#9462 opened Nov 8, 2024 by maartenciers
ProTip! no:milestone will show everything without a milestone.