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refactor: consolidate aux tag value decoding in get_tag and get_tags CI #526: Pull request #1391 synchronize by nh13
35m 53s nh13:nh13/consolidate-aux-tag-decoding
nh13:nh13/consolidate-aux-tag-decoding
35m 53s
refactor: extract shared PileupColumn guard check CI #525: Pull request #1392 synchronize by nh13
44m 10s nh13:nh13/consolidate-pileup-iteration
nh13:nh13/consolidate-pileup-iteration
44m 10s
refactor: consolidate aux tag value decoding in get_tag and get_tags CI #524: Pull request #1391 synchronize by nh13
10m 18s nh13:nh13/consolidate-aux-tag-decoding
nh13:nh13/consolidate-aux-tag-decoding
10m 18s
refactor: extract shared helpers for reference_name and next_reference_name CI #523: Pull request #1390 synchronize by nh13
45m 40s nh13:nh13/consolidate-reference-name
nh13:nh13/consolidate-reference-name
45m 40s
refactor: extract shared PileupColumn guard check CI #522: Pull request #1392 opened by nh13
6m 2s nh13:nh13/consolidate-pileup-iteration
nh13:nh13/consolidate-pileup-iteration
6m 2s
refactor: consolidate aux tag value decoding in get_tag and get_tags CI #521: Pull request #1391 opened by nh13
4m 46s nh13:nh13/consolidate-aux-tag-decoding
nh13:nh13/consolidate-aux-tag-decoding
4m 46s
refactor: extract shared helpers for reference_name and next_reference_name CI #520: Pull request #1390 opened by nh13
5m 4s nh13:nh13/consolidate-reference-name
nh13:nh13/consolidate-reference-name
5m 4s
refactor: use bam_set_qname in query_name setter CI #519: Pull request #1389 opened by nh13
51m 33s nh13:nh13/use-bam-set-qname
nh13:nh13/use-bam-set-qname
51m 33s
refactor: use bam_cigar2qlen for query length calculation CI #518: Pull request #1388 opened by nh13
49m 47s nh13:nh13/use-bam-cigar2qlen
nh13:nh13/use-bam-cigar2qlen
49m 47s
fix: add missing NULL guard in PileupColumn.get_query_qualities CI #517: Pull request #1380 synchronize by nh13
58m 26s nh13:nh13/fix-pileup-qualities-null-guard
nh13:nh13/fix-pileup-qualities-null-guard
58m 26s
perf: accumulate insertion count during CIGAR loop in build_alignment_sequence CI #516: Pull request #1387 opened by nh13
58m 28s nh13:nh13/build-alignment-seq-insertion-count
nh13:nh13/build-alignment-seq-insertion-count
58m 28s
perf: cache complement translation table in get_forward_sequence CI #515: Pull request #1386 opened by nh13
33m 48s nh13:nh13/cache-complement-table
nh13:nh13/cache-complement-table
33m 48s
perf: remove redundant copy in getSequenceInRange CI #514: Pull request #1385 opened by nh13
55m 2s nh13:nh13/fix-sequence-range-copy
nh13:nh13/fix-sequence-range-copy
55m 2s
perf: disable Cython profiling hooks in production builds CI #513: Pull request #1384 opened by nh13
31m 45s nh13:nh13/disable-cython-profile
nh13:nh13/disable-cython-profile
31m 45s
refactor: remove unused variables in compare method CI #512: Pull request #1383 opened by nh13
57m 58s nh13:nh13/remove-unused-compare-vars
nh13:nh13/remove-unused-compare-vars
57m 58s
refactor: simplify update_bin by collapsing duplicate branches CI #511: Pull request #1382 opened by nh13
44m 24s nh13:nh13/simplify-update-bin
nh13:nh13/simplify-update-bin
44m 24s
fix: fix TypeError in modified_bases_forward when query_sequence is None CI #510: Pull request #1381 opened by nh13
55m 45s nh13:nh13/fix-modified-bases-forward-typeerror
nh13:nh13/fix-modified-bases-forward-typeerror
55m 45s
fix: add missing NULL guard in PileupColumn.get_query_qualities CI #509: Pull request #1380 opened by nh13
8m 34s nh13:nh13/fix-pileup-qualities-null-guard
nh13:nh13/fix-pileup-qualities-null-guard
8m 34s
Added VariantContig and VariantMetadata documentation. CI #508: Pull request #1361 synchronize by TimD1
8m 52s TimD1:td_add-variant-metadata-docs
TimD1:td_add-variant-metadata-docs
8m 52s
Add documentation for all VariantRecord related classes CI #507: Pull request #1359 synchronize by TimD1
11m 4s TimD1:td_add-variant-record-docs
TimD1:td_add-variant-record-docs
11m 4s
Add VariantRecordSample documentation CI #506: Pull request #1358 synchronize by TimD1
12m 58s TimD1:td_407_add-variant-record-sample-docs
TimD1:td_407_add-variant-record-sample-docs
12m 58s
Fix silent truncation in IteratorRowAllRefs on I/O errors CI #505: Pull request #1379 opened by gileshall
Action required gileshall:fix-silent-truncation-iteratorrowallrefs
gileshall:fix-silent-truncation-iteratorrowallrefs
Action required
Update cibuildwheel and use the new GH Actions case() function CI #504: Commit 7929385 pushed by jmarshall
9m 41s master
master
9m 41s
Update imports to htslib/samtools/bcftools 1.23 (PR #1372) CI #500: Commit b7bf2cf pushed by jmarshall
11m 30s master
master
11m 30s
Apply setup.py's modernisation to (unused) linker_tests/link_pre_489 CI #499: Commit 0a1997e pushed by jmarshall
8m 28s master
master
8m 28s