Cache complement translation table in get_forward_sequence#1386
Draft
nh13 wants to merge 1 commit intopysam-developers:masterfrom
Draft
Cache complement translation table in get_forward_sequence#1386nh13 wants to merge 1 commit intopysam-developers:masterfrom
nh13 wants to merge 1 commit intopysam-developers:masterfrom
Conversation
nh13
changed the title
nh13
force-pushed
the
nh13/cache-complement-table
branch
from
4f859b0 to
015246a
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
str.maketrans("ACGTacgtNnXx", "TGCAtgcaNnXx")call from insideget_forward_sequence()to a module-levelCOMPLEMENT_TABLEconstantTest plan
REF_PATH=: pytest tests/AlignedSegment_test.py -v -k forwardAI disclosure: This PR was AI-assisted using Claude Code. The issue was identified via AI-guided code review, and the implementation was drafted by AI with human review and approval.