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16 Open 52 Closed
16 Open 52 Closed
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Issues list

Cannot parse container string in 'Nextflow configs' bug Something isn't working
#191 opened Mar 11, 2025 by asmariyaz23
Variant annotation VEP plugins enhancement Improvement for existing functionality
#189 opened Mar 6, 2025 by leurwu 1.3.0
Pipeline succeeded only for the first sample in the sample sheet bug Something isn't working
#188 opened Mar 6, 2025 by leurwu 1.2.0
1
NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:SAMTOOLS_MERGE: File 'S-001885241.bam' exists. Please apply '-f' to overwrite. Abort. bug Something isn't working
#186 opened Mar 4, 2025 by jz-channing 1.2.0
1
Don't generate the STAR index when no FASTQ files have been given and --star_index is empty bug Something isn't working
#183 opened Mar 3, 2025 by nvnieuwk 1.2.0
Add samtools markdup for UMI aware markdup enhancement Improvement for existing functionality
#181 opened Mar 3, 2025 by matthdsm 1.3.0
Thoughts on submitting RNAVar to a journal? question Further information is requested
#147 opened Jun 26, 2024 by Shaun-Regenbaum 1.3.0
Add samtools mpileup as an alternative variant caller enhancement Improvement for existing functionality
#110 opened Nov 28, 2023 by Leon-Bichmann 1.3.0
Add trimming step enhancement Improvement for existing functionality
#96 opened Aug 15, 2023 by bounlu 1.3.0
Singularity container retrieval failed bug Something isn't working
#93 opened Jun 1, 2023 by hakobyansiras 1.2.0
@maxulysse
ENSEMBLVEP fails after module update bug Something isn't working
#84 opened Feb 8, 2023 by bounlu 1.2.0
3
Single cell somatic mutations enhancement Improvement for existing functionality
#77 opened Nov 22, 2022 by cutleraging 1.3.0
1
download_cache.nf not found bug Something isn't working
#71 opened Sep 23, 2022 by gianfilippo 1.2.0
3
Optional filter out RNA editing variants enhancement Improvement for existing functionality
#63 opened Jun 29, 2022 by ojziff 1.3.0
Summary metrics of haplotypecaller.filtered.vcf enhancement Improvement for existing functionality
#59 opened Jun 20, 2022 by ojziff 1.3.0
@praveenraj2018
1
SIFT missense predictions for genomes enhancement Improvement for existing functionality
#20 opened Feb 1, 2022 by m3hdad 1.3.0
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