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Add samtools markdup for UMI aware markdup #181

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matthdsm opened this issue Mar 3, 2025 · 0 comments
Open

Add samtools markdup for UMI aware markdup #181

matthdsm opened this issue Mar 3, 2025 · 0 comments
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enhancement Improvement for existing functionality
Milestone
1.3.0

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@matthdsm
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matthdsm commented Mar 3, 2025

Description of feature

this also merges the "sort and index" with the "picard markduplicates" step AND outputs native cram
@matthdsm matthdsm added the enhancement Improvement for existing functionality label Mar 3, 2025
@maxulysse maxulysse added this to the 1.3.0 milestone Mar 10, 2025
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enhancement Improvement for existing functionality
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1.3.0
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@maxulysse @matthdsm