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Error running spades 4.2.0 and extracting UCE data [Fixed]

Status: Open.

#321 In juliema/aTRAM;

· bjzelvelder opened on Jun 26, 2025

Could you help me figure out what causes the error?

Status: Open.

#320 In juliema/aTRAM;

· luckyvivi opened on Aug 6, 2023

[Question] How to use aTRAM stitcher? (no tutorial available / help menu unclear)

Status: Open.

#317 In juliema/aTRAM;

· ClaraKoehne opened on Oct 19, 2022

Only using one CPU for atram_preprocessor.py

Status: Open.

#316 In juliema/aTRAM;

· mchaney1 opened on Sep 26, 2022

## How to continue the uncompleted tasks?

Status: Open.

#315 In juliema/aTRAM;

· laiqiang0728 opened on Jul 5, 2022

[Errno 2] No such file or directory

Status: Open.

#314 In juliema/aTRAM;

· danielyao12 opened on Jul 2, 2022

using a different genetic code on stitcher

Status: Open.

#313 In juliema/aTRAM;

· jacksonhturner opened on Jun 30, 2022

stitcher does not recognise contig file

Status: Open.

#312 In juliema/aTRAM;

· Upasana1991 opened on May 28, 2022

how to merge many .fa files to one single target file containing list of amino acids

Status: Open.

#311 In juliema/aTRAM;

· Upasana1991 opened on May 14, 2022

Dist utils is being removed in Python 3.12

Status: Open.

#309 In juliema/aTRAM;

· rafelafrance opened on Apr 8, 2022

Abyss assembler issue: Missing files in temp directory

Status: Open.

#308 In juliema/aTRAM;

· rafelafrance opened on Apr 7, 2022

Install in conda environment

Status: Open.

#307 In juliema/aTRAM;

· RvV1979 opened on Jan 2, 2022