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24 Open 853 Closed
24 Open 853 Closed
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Issues list

Stopping in STEP18 -> 17.checkM_batch.pl
#929 opened Jan 31, 2025 by sean-workman
4
Stopped at STEP9 -> 09.summarycontigs3.pl
#928 opened Jan 30, 2025 by Pmishraa
7
How to get the unclassified sequences (sqm_longreads)
#924 opened Jan 21, 2025 by inej90
1
whether Taxonomy barplot made in R from squeezemeta output represents taxonomy of reads or assembly
#923 opened Jan 20, 2025 by mohitsharma-123
3
sqm2itol.pl presents
#922 opened Jan 20, 2025 by Panda-smile
How to change the minimun length of SQM analysis (200 pb)
#921 opened Jan 16, 2025 by inej90
4
LoadSQM issue
#920 opened Jan 13, 2025 by tboonf
6
How to combine outputs of sqm_longreads.pl without reprocessing FASTQ files
#918 opened Jan 6, 2025 by bojusemo
4
results of gene detection with the doublepass option
#917 opened Dec 26, 2024 by rubmc97
1
Step 10. Mapping Samples - excessive execution time?
#909 opened Nov 21, 2024 by MicroSeq
7
sqm_mapper: reuse mapped reference genome possible?
#905 opened Nov 15, 2024 by dutchscientist
5
Metadata connections SQMtools enhancement New feature or request
#849 opened Jun 7, 2024 by inej90
1
Workflow, tool version outline enhancement New feature or request
#825 opened Apr 11, 2024 by s-junguy
7
"zip file is corrupt" when loading a zipped project into SQMtools bug Something isn't working SQMtools
#755 opened Nov 19, 2023 by fpusan
1
The "tax" parameter of the "subsetTax" function could accept list of taxons enhancement New feature or request SQMtools
#749 opened Nov 9, 2023 by glenjasper
3
Add the taxonomic category "Kingdom" for eukaryotes enhancement New feature or request Taxonomic annotation
#747 opened Nov 8, 2023 by glenjasper
4
Using dedupe.sh to identify and remove contigs contained in others (merged mode) Assembly enhancement New feature or request merged mode seqmerge mode
#701 opened Jun 26, 2023 by eperezv
2
sqm_longreads yields wrong mcount table bug Something isn't working sqm_longreads SQM_reads
#686 opened May 19, 2023 by jllavin77
10
option parser issue enhancement New feature or request
#609 opened Jan 18, 2023 by moritzbuck
1
sqm_reads.pl fails if -p is set to an absolute path instead of a relative one bug Something isn't working sqm_longreads SQM_reads
#586 opened Nov 22, 2022 by fpusan
04.rundiamond.pl error while using sqm_annot.pl
#558 opened Oct 10, 2022 by PuspenduSardar
8
Support for EggNOG version 5.0.2 databases enhancement New feature or request
#506 opened Jun 20, 2022 by mdehollander
2
sqm_reads2tables.py problem enhancement New feature or request
#477 opened May 4, 2022 by fpeti11
13
sqm2tables.py - All fixes in one place :-) SQMtools
#416 opened Jan 20, 2022 by biobrad
8
ProTip! What’s not been updated in a month: updated:<2025-01-01.