Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Still have some doubts if I choose the correct reference data: benjjneb/dada2#2053 (comment)
Main question is if the
...toSpecies
datasets can/should be used (currently we would download the..toGenus
datasets.For
gtdb
andRefSeq_RDP
datasets there are again different naming schemes and I do not yet know if the genus one is the correct one (the also need to be added to the tool form).Edit: Was clarified in the linked issue for the maintained DBs. I decided to go only for those (for now).
FOR CONTRIBUTOR: