Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

update dada2 reference data #6593

Draft
wants to merge 3 commits into
base: main
Choose a base branch
from

Conversation

bernt-matthias
Copy link
Contributor

@bernt-matthias bernt-matthias commented Nov 27, 2024

Still have some doubts if I choose the correct reference data: benjjneb/dada2#2053 (comment)

Main question is if the ...toSpecies datasets can/should be used (currently we would download the ..toGenus datasets.

For gtdb and RefSeq_RDP datasets there are again different naming schemes and I do not yet know if the genus one is the correct one (the also need to be added to the tool form).

Edit: Was clarified in the linked issue for the maintained DBs. I decided to go only for those (for now).

FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

@bernt-matthias bernt-matthias marked this pull request as draft November 27, 2024 17:08
@bernt-matthias bernt-matthias marked this pull request as ready for review December 3, 2024 10:28
@bernt-matthias bernt-matthias marked this pull request as draft December 3, 2024 11:30
@bernt-matthias
Copy link
Contributor Author

Now the entries for the dada2_taxonomy and dada2_species datatables do not match up. Need to restructure the whole thing.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant