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Gtdbtk update and make it actually work #22396

Gtdbtk update and make it actually work

Gtdbtk update and make it actually work #22396

Triggered via pull request May 14, 2026 17:34
Status Failure
Total duration 12m 12s
Artifacts 6

pr.yaml

on: pull_request
Matrix: Setup cache and determine changed repositories
Matrix: Lint tool-list
Matrix: Lint Python scripts
Matrix: Lint R scripts
Matrix: Test tools
Check file sizes
56s
Check file sizes
Matrix: Combine chunked test results
Matrix: Deploy
Check workflow success
2s
Check workflow success
Report deploy status
Report deploy status
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Annotations

3 errors and 1 warning
Lint tool-list (3.11)
Process completed with exit code 1.
Combine chunked test results (3.11)
Process completed with exit code 1.
Check workflow success
Process completed with exit code 1.
Lint tool-list (3.11)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: sharesight/find-github-pull-request@v1.3.0. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
All tool test results
149 KB
sha256:ca783692c57feb8afcefd596247046203e8df34b8243395dd01e588313142aad
Tool linting output
1.07 KB
sha256:aa6d7ea61ebd1ad152b56abf6dbe30f851f386f68e773b460cfee40685e43b91
Tool test output 0
100 KB
sha256:8ab8b75c9473d70f377224fdbb13c9efc83a428ea07b5a18364db9f70facc3e2
Tool test output 1
114 KB
sha256:1174fe0d58b8112de1fff78b97a565f4690ed48b1179398591aca1edd6ecbd04
Tool test output 2
110 KB
sha256:4e96e0d8500352e31b72c4953f45eb2aafe976ec17675465b4626240d0f948e2
Tool test output 3
107 KB
sha256:e4951679464097cab21b6ad16099b69f79d48d873129d7c9e07d306f223374ca