Removed old test.yml file and replaced with new yml file to test pipe… #7
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name: Test-QCD-Pipeline | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install pytest snakemake | |
- name: Install Singularity | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y singularity | |
- name: Run Snakemake tests | |
run: | | |
pytest tests/test_pipeline.py | |