Removed old test.yml file and replaced with new yml file to test pipe…

…line only

.github/workflows/test_pipeline.yml

@@ -0,0 +1,56 @@
+name: Test QCD Pipeline
+run-name: ${{ github.actor }} is testing snakemake workflow 🚀
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  Test-QCD-Pipeline:
+    runs-on: ubuntu-latest
+    steps:
+      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
+      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
+      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
+
+      - name: Checkout repository
+        uses: actions/checkout@v3
+      - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
+      - run: echo "🖥️ The workflow is now ready to test your code on the runner."
+
+      - name: List files in the repository
+        run: |
+          ls
+      
+      - name: Get working directory
+        run: |
+          pwd
+      
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'  
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install pytest snakemake  
+
+      - name: Install Singularity
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y singularity
+      - name: Snakemake workflow
+        uses: snakemake/snakemake-github-action@v1
+        with:
+          directory: '.'
+          snakefile: 'QCD.smk'
+          args: '--cores 4 --use-conda --use-singularity --use-envmodules --conda-cleanup-pkgs cache -j 999 --conda-frontend conda --configfile config/config.yaml --latency-wait 1000'
+      - run: echo "🍏 This job's status is ${{ job.status }}."
+
+      #- name: Run Snakemake tests
+      #  run: |
+      #    pytest tests/test_pipeline.py