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25 Open 202 Closed
25 Open 202 Closed
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Issues list

Remove pylance depthcharge incompatibility work around. enhancement New feature or request
#388 opened Oct 8, 2024 by Lilferrit Depthcharge v0.4
Remove depthcharge MGF prefix bug workaround enhancement New feature or request
#387 opened Oct 4, 2024 by Lilferrit Depthcharge v0.4
1
Use full file path in the MztabWriter run map instead of just the file name. bug Something isn't working enhancement New feature or request
#386 opened Oct 4, 2024 by Lilferrit Depthcharge v0.4
1
Use lightning.pytorch.loggers.TensorBoardLogger for tensorboard logging. enhancement New feature or request
#382 opened Sep 18, 2024 by Lilferrit
1
@Lilferrit
Implement early stopping / validation patience interval. enhancement New feature or request
#375 opened Sep 6, 2024 by Lilferrit
1
ValueError upon unexpected scan title format bug Something isn't working
#354 opened Jul 7, 2024 by MNTsnowman
1
7
Make Casanovo model compatible with torch.compile enhancement New feature or request
#347 opened Jun 25, 2024 by Lilferrit
Use Fourier embeddings enhancement New feature or request
#345 opened Jun 25, 2024 by wsnoble
Migrating PeptideMass, PeptideDecoder, and PeptideEncoder from depthcharge v0.2.3 to casanovo question Further information is requested
#337 opened May 18, 2024 by CCranney Depthcharge v0.4
1
3
Make Casanovo produce Skyline compatible output enhancement New feature or request
#330 opened May 14, 2024 by wsnoble
@justin-a-sanders
Export casanovo to torchscript/onnx enhancement New feature or request
#328 opened May 11, 2024 by LLautenbacher
1
Add rotary embeddings enhancement New feature or request
#321 opened Apr 17, 2024 by wsnoble
Implement bidirectional decoding enhancement New feature or request
#320 opened Mar 27, 2024 by wsnoble
1
add additional inputs to encoder and decoder enhancement New feature or request
#318 opened Mar 27, 2024 by wsnoble
1
where are the models trained with my own data saved? question Further information is requested
#291 opened Feb 11, 2024 by DIGEdige Casanovo v5.0.0
@Lilferrit
2
Rank of updates array (1) must be greater than or equal to inner-most dimension of indices array (29) bug Something isn't working macos
#285 opened Jan 29, 2024 by wsnoble
3
KeyError: '$' bug Something isn't working macos
#284 opened Jan 25, 2024 by patrick-willems
18
Casanovo does not check for repeated m/z values in spectra
#272 opened Dec 19, 2023 by cfmelend Depthcharge v0.4
2
Add min_peaks config option enhancement New feature or request good first issue Good for newcomers
#264 opened Nov 10, 2023 by wsnoble Depthcharge v0.4
1
Add the option to turn off the precursor m/z filter entirely enhancement New feature or request
#247 opened Sep 22, 2023 by melihyilmaz Casanovo v5.0.0
1
Add reflected spectrum encoder enhancement New feature or request
#214 opened Jul 19, 2023 by wsnoble
2
Fix error message "TypeError: Can't implicitly convert non-string objects to strings" bug Something isn't working
#207 opened Jul 10, 2023 by wsnoble Depthcharge v0.4
3
Add brackets and hyphens to PTMs enhancement New feature or request
#201 opened Jun 28, 2023 by wsnoble Depthcharge v0.4
5
Track scan numbers in MGF files enhancement New feature or request
#142 opened Mar 2, 2023 by wsnoble
Casanovo predicts for invalid spectra bug Something isn't working
#56 opened Aug 5, 2022 by bittremieux Depthcharge v0.4
1
3
ProTip! no:milestone will show everything without a milestone.