v1.4

Minor updates to improve caller-wise merge.

This will be the last version for SVision v1. We will move to SVision2

SVision-v1.3.8

1. Bug fixed for processing species with different number of chromosomes.
2. Bug fixed for SV score error while detecting from assemblies. Please remember to activate the contig mode with --contig.
3. Replacing a new link for downloading the GRCh38 reference.

SVision-v1.3.7-beta

Updates the INFO fields for CSV:

• GraphBKPS is no longer used in future versions.
• GFA_FILE_PREFIX is added to link CSV events and its corresponding GFA file under ./graphs directory.
• GFA_S is added to represent nodes in a GFA file. For example, ‘GFA_S=S1,S2’ indicates that CSV contains two nodes S1 and S2, where the details of these two nodes can be found in the GFA file via ‘GFA_FILE_ID’.
• GFA_L is added to represents links between nodes in a GFA file. Given a CSV containing INFO fields ‘GFA_S=S1,S2;GFA_L=S1+S2-’, it is interpreted as a CSV containing two nodes connected by an edge visited S2 in reverse order, indicating a reversed genomic segment representing by node S2.

SVision-v1.3.6-beta

1. Optimized code
2. Add demo data
3. Upgrade installation

SVision-v1.3.5-beta

1. Fixed bugs for variant ID and graph ID generation.
2. Modified parameters.
3. Added exception handles.

SVision-v1.3.3-beta

Fixed bugs for CSV graph output.

SVision-v1.3.1-beta

Adding install from PyPI

SVision-v1.2.1-beta

README updates