Add support files

Dockerfile

@@ -0,0 +1,29 @@
+#FROM python:3.6
+#
+#WORKDIR .
+#
+#ADD . .
+#
+#RUN pip install -r requirements.txt
+#
+#CMD ["python", "SVision"]
+
+FROM continuumio/miniconda3
+
+WORKDIR .
+
+COPY . .
+RUN conda env create -f environment.yml
+
+# Make RUN commands use the new environment:
+SHELL ["conda", "run", "-n", "svisionenv", "/bin/bash", "-c"]
+
+# Demonstrate the environment is activated:
+RUN echo "Make sure tensorflow is installed:"
+RUN python -c "import tensorflow"
+
+ENV PATH /opt/conda/envs/svisionenv/bin:$PATH
+
+# The code to run when container is started:
+#COPY SVision .
+ENTRYPOINT ["conda", "run", "--no-capture-output", "-n", "svisionenv", "python"]

environment.yml

@@ -0,0 +1,19 @@
+name: svisionenv
+channels:
+  - anaconda
+  - conda-forge
+  - bioconda
+  - defaults
+dependencies:
+  - python=3.6
+  - tensorflow=1.14.0
+  - pip=21.1.3
+  - pysam=0.16.0
+  - pip:
+    - numpy==1.16.4
+    - scipy==1.5.4
+    - pandas==1.1.3
+    - opencv-python-headless==4.5.4.58
+    - beautifulsoup4==4.9.3
+    - intervaltree==3.1.0
+    - pyvcf==0.6.8

requirements.txt

@@ -0,0 +1,11 @@
+tensorflow==1.14.0
+pysam==0.16.0
+numpy==1.16.4
+scipy==1.5.4
+pandas==1.1.3
+opencv-python==4.5.4.58
+beautifulsoup4==4.9.3
+intervaltree==3.1.0
+soupsieve==2.2.1
+sortedcontainers==2.4.0
+pyvcf==0.6.8