Jul 29, 2024: Test summary pt2

include/teloscope.h

@@ -103,7 +103,6 @@ class Teloscope {
         allWindows.push_back(std::make_tuple(seqPos, header, pathWindows)); // Giulio: cleaner with struct
     }
 
-
     void sortWindowsBySeqPos() {
         std::sort(allWindows.begin(), allWindows.end(), [](const auto& one, const auto& two) {
             return std::get<0>(one) < std::get<0>(two);
@@ -204,10 +203,11 @@ class Teloscope {
     }
 
     void printSummary() {
-        std::cout << "Total windows analyzed: " << totalNWindows << "\n";
-        std::cout << "Total input patterns found: " << std::endl;
+        std::cout << "\n" << "+++Summary Report+++" << "\n";
+        std::cout << "Total windows analyzed:" << "\t" << totalNWindows << "\n";
+        std::cout << "Total input patterns found:" << "\n";
         for (const auto& [pattern, count] : patternCounts) {
-            std::cout << "Pattern: " << pattern << " Count: " << count << std::endl;
+            std::cout << "Pattern:" << "\t" << pattern << "\t" << count << "\n";
         }
     }
 };

testFiles/random1.fasta

@@ -1,14 +1,14 @@
 >Header1 5bp sequence with no gaps and 2 lowercase bases
-CGacT
+CGaTT
 
 >Header2 5bp sequence with internal 1bp non-canonical gap
 CGAXT
 
 >Header3 10bp sequence with internal 4bp and 1bp terminal canonical gap
-TGANATNCTN
+TAANATNCTN
 
 >Header4 15bp sequence with start 3bp canonical gap and 3 lowercase bases
-NNNTTCCTcgCACtC
+NNNTTCCTcgCACtT
 
 >Header5 15bp sequence with terminal 3bp canonical gap
-AACTCGATCACGNNN
+AACTCGATCATTNNN

testFiles/random2.fasta

@@ -5,10 +5,10 @@ CTTCAGGCTTAAAGC
 CTTAGGGCTTAGGGC
 
 >Header3_no_gap_2_patterns
-CCCTTACCTTAGGGC
+CCCTAACCTTAGGGC
 
 >Header4_initial_gap_1_pattern
-NNNTCCCTTAcgCtC
+NNNTCCCTAAcgCtC
 
 >Header5_terminal_gap_1_pattern
 ATCTTAGGGACGNNN
@@ -17,4 +17,4 @@ ATCTTAGGGACGNNN
 TTAGGgNNCTTAGGGACNNTTaggg
 
 >Header7_multiple_gaps_2_patterns
-AAACNNNGCCCTTATGNNNTTAGGG
+AAACNNNGCCCTAATGNNNTTAGGG

testFiles/random3.fasta

@@ -1,5 +1,5 @@
 >Header1_low_entropy
-TTTTTTTTTAAGGGGGGGGG
+TTTTTTTTTAGGGGGGGGGG
 
 >Header2_fully_compressible
 TTTTTTTTTTAAAAAAAAAA

validateFiles/random1.fasta.1.tst

@@ -1,2 +1,12 @@
-testFiles/random1.fasta -w 3 -s 1
-embedded
+testFiles/random1.fasta -w 3 -s 1 -p TT
+embedded
+/// Teloscope v0.0.1
+Waiting for jobs to complete
+All jobs completed
+Reporting window matches and metrics in BED/BEDgraphs...
+
++++Summary Report+++
+Total windows analyzed: 40
+Total input patterns found:
+Pattern:    AA  2
+Pattern:    TT  4

validateFiles/random2.fasta.1.tst

@@ -1,2 +1,12 @@
-testFiles/random2.fasta -w 10 -s 5
-embedded
+testFiles/random2.fasta -w 10 -s 5 -p TTAGGG
+embedded
+/// Teloscope v0.0.1
+Waiting for jobs to complete
+All jobs completed
+Reporting window matches and metrics in BED/BEDgraphs...
+
++++Summary Report+++
+Total windows analyzed: 21
+Total input patterns found:
+Pattern:    CCCTAA  3
+Pattern:    TTAGGG  8

validateFiles/random3.fasta.1.tst

@@ -1,2 +1,12 @@
-testFiles/random3.fasta -w 10 -s 5
-embedded
+testFiles/random3.fasta -w 10 -s 5 -p TTAGGG
+embedded
+/// Teloscope v0.0.1
+Waiting for jobs to complete
+All jobs completed
+Reporting window matches and metrics in BED/BEDgraphs...
+
++++Summary Report+++
+Total windows analyzed:
+Total input patterns found:
+Pattern:    CCCTAA  0
+Pattern:    TTAGGG  1