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Refactor + Rewrite (0.3.0)#1

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twbattaglia wants to merge 18 commits intomastertwbattaglia/koeken:masterfrom refactor-0.3.0twbattaglia/koeken:refactor-0.3.0Copy head branch name to clipboard

+545-2,516

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Commits on Dec 12, 2016

• refactor setup.py

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Commits on Dec 13, 2016

• rewrite params

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• refactor summarize taxa

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Commits on Dec 14, 2016

• added PICRUSt functionality

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• split feature table and mapping file to prepare for analysis

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• added functions for running lease workflow

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• added plot cladogram function

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• change to console script execution instead of .py calling

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• update parameters text

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Commits on Dec 15, 2016

• colored terminal output

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• fix lefse requirement for travisCI

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Commits on Jan 29, 2017

• fix issues with no split

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• remove lease requirement

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Commits on Feb 1, 2017

• Update travisCI required packages

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• Update subprocess command to be more error friendly

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• Fix command labels

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• remove overwrite command for now

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Commits on Feb 2, 2017

• Add list of column variables with error message

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