gtf
Here are 48 public repositories matching this topic...
Another Gtf/Gff Analysis Toolkit
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Jun 6, 2024 - Perl
A Rust library and CLI tool to handle genomic transcripts
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May 22, 2024 - Rust
Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.
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Apr 28, 2024 - Python
A high-performance BED-to-GTF converter written in Rust
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Apr 13, 2024 - Rust
Fastest GTF/GFF-to-BED converter chilling around
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Mar 27, 2024 - Rust
A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.
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Mar 1, 2024 - Rust
This project consists of a Python script designed to convert coding sequences found in a GTF (Gene Transfer Format) file to protein sequences in the FASTA format. The code was developed as part of a university project for genomic sequence analysis.
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Feb 27, 2024 - Jupyter Notebook
Go / Golang Bioinformatics Library
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Feb 18, 2024 - Go
GTF/GFF per gene non-overlapping exon length calculator
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Jan 2, 2024 - Rust
An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.
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Dec 2, 2023
Extract Sequence from Genome According to Annotation File
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Nov 1, 2023 - R
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
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Oct 12, 2023 - Python
A small library to work with ensembl and other annotations in python
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Sep 6, 2023 - Python
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