Software platform for clinical neuroimaging studies
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
Small Animal Magnetic Resonance Imaging via Python.
FSL-R Interface package
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages
A re-implementation of FSL's Brain Extraction Tool in Python
The project is used to do preprocessing on brain MR images by using Nipype.
Code for performing static, dynamic and real-time shimming using external and internal MRI shim coils
Introduction to dMRI
Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
PNH segmentation pipelines based on nipype
Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12
atlasBREX: Automated averaged template-derived brain extraction in animal MRI
A volumetric version of the HCP-MMP1 atlas conveniently imported in FSL. This repo was used in Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21.
A Matlab-based software package for preprocessing the resting-state fMRI data
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