fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
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Updated
May 21, 2024 - HTML
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
Using computational tools to explore the networks underlying cognitive neuroscience
Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.
Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis
Analysis scripts and movie annotations for NNDb
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI
A generally applicable whole-brain preprocessing toolbox for mice and rats
🐀🧠Using Convolutional Neural Networks to Predict fMRI Noise in Rats
Implementation of LSTM and CNN models for classification of visual stimuli from fMRI data on BOLD5000 dataset
This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.
Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).
legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm
A collection of python scripts and functions to (po)st(p)rocess fmridata, preprocessed with fmriprep
Code to analyze audio-visual-tactile high-resolution 7T data
This repository is associated with the manuscript: “Graph Ricci Curvatures Reveal Atypical Functional Connectivity in Autism Spectrum Disorder”
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