Fix same issues in "new format" cov as last two cov loading bugs

statgen · May 10, 2024 · 51f1c0d · 51f1c0d
1 parent de92d92
commit 51f1c0d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/raremetal/src/Meta.cpp b/raremetal/src/Meta.cpp
@@ -5179,15 +5179,15 @@ Meta::updateSingleVariantGroupStatsNewFormat(GroupFromAnnotation &group, int stu
         int p = markerPosHash.Integer(mkname);
         if (p == -1)
         {
-            return;
+            continue;
         }
         p--;
         p -= m;
         String markerName = String(std::to_string(study).c_str()) + ":" + chr[s] + ":" + pos[s];
         int skip = SNPexclude.Integer(markerName);
         if (skip != -1)
         {
-            return;
+            continue;
         }
         int flip = flipSNP.Integer(markerName);
         double factor = 1.0;