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fix: Allow concurrent and large refgenie downloads #1172

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fix: Allow concurrent and large refgenie downloads #1172

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61758c3
perf: bump Salmon to v1.10.1
Austin-s-h Mar 25, 2023
8eb7a1d
fix: reorder to prioritize bioconda
Austin-s-h Mar 25, 2023
60f066f
Merge branch 'snakemake:master' into master
Austin-s-h Mar 27, 2023
1c99871
fix: Allow for large assets in refgenie
Austin-s-h Mar 27, 2023
d0dcc61
fix: read-only conf acces for concurrent rules dl
Austin-s-h Mar 27, 2023
4d3758c
fix: handle refgenconf write lock error
Austin-s-h Mar 28, 2023
562df5f
Merge pull request #1 from snakemake/master
Austin-s-h Mar 28, 2023
c074c68
doc: Remove comments
Austin-s-h Mar 28, 2023
ee3bad5
fix: formatting refgenie
Austin-s-h Mar 28, 2023
fce4bb0
feat: add logs to refgenie rules
Austin-s-h Mar 28, 2023
73e3a02
fix: remove input string from rsem wrapper
Austin-s-h Mar 31, 2023
a3b02b8
perf: reorganize inputs and add back input_string
Austin-s-h Mar 31, 2023
0d10e6a
fix: switch to Path in order to resolve basename more robustly
Austin-s-h Mar 31, 2023
fe7b05a
fix: force string in reference_prefix
Austin-s-h Mar 31, 2023
c2230b2
Merge pull request #2 from snakemake/master
Austin-s-h Apr 3, 2023
b3d832b
Merge branch 'snakemake:master' into master
Austin-s-h Apr 11, 2023
5078fa2
Merge pull request #3 from snakemake/master
Austin-s-h Apr 17, 2023
b927c4f
chore: release 1.26.0
github-actions[bot] Apr 17, 2023
6b3d6e3
Merge pull request #4 from sansterbioanalytics/release-v1.26.0
Austin-s-h Apr 17, 2023
64bd5e6
ci: update workflows to self-hosted
Austin-s-h Apr 17, 2023
decd1a5
perf: resolve conflict and adjust force_large to param
Austin-s-h Feb 7, 2025
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8 changes: 5 additions & 3 deletions .github/workflows/conventional-prs.yml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: PR
name: Lint PR Title
on:
pull_request_target:
types:
Expand All @@ -9,8 +9,10 @@ on:

jobs:
title-format:
runs-on: ubuntu-latest
runs-on: [self-hosted, Linux, v1.0.2]
steps:
- uses: amannn/action-semantic-pull-request@v3.4.0
- uses: amannn/action-semantic-pull-request@v3.6.0
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
validateSingleCommit: true
5 changes: 2 additions & 3 deletions .github/workflows/qc.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,10 @@ name: Code quality

on:
pull_request:
branches_ignore: []

jobs:
formatting:
runs-on: ubuntu-latest
runs-on: [self-hosted, Linux, python-3.10]
steps:
- uses: actions/checkout@v3

Expand Down Expand Up @@ -37,7 +36,7 @@ jobs:
# snakefmt --check $(git diff origin/master --name-only | grep Snakefile)

linting:
runs-on: ubuntu-latest
runs-on: [self-hosted, Linux, python-3.10]
steps:
- uses: actions/checkout@v1

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