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Pull requests: snakemake/snakemake-wrappers
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fix!: Switch token to an input file
#5302
opened May 21, 2026 by
fgvieira
Collaborator
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7 tasks done
chore(master): release 9.8.1
autorelease: pending
#5295
opened May 15, 2026 by
snakemake-bot
Contributor
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perf: autobump utils/nextflow/environment.yaml
utils/nextflow
#5275
opened May 1, 2026 by
snakedeploy-bot
Bot
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fix!: make star index output and star align input idx a multiext()
#5226
opened Apr 14, 2026 by
dlaehnemann
Member
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7 tasks done
perf: autobump bio/transdecoder/longorfs/environment.yaml
bio/transdecoder/longorfs
#5215
opened Apr 3, 2026 by
snakedeploy-bot
Bot
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perf: autobump bio/transdecoder/predict/environment.yaml
bio/transdecoder/predict
#5214
opened Apr 3, 2026 by
snakedeploy-bot
Bot
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feat: add kraken2 wrappers (classify, build, add-to-library)
#5086
opened Mar 16, 2026 by
warrok97ao
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7 tasks done
perf: autobump bio/gatk/applybqsrspark/environment.yaml
bio/gatk/applybqsrspark
#4977
opened Feb 20, 2026 by
snakedeploy-bot
Bot
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feat: Add wrappers in bio/reference for Ensembl Genomes
#4882
opened Dec 23, 2025 by
kbseah
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7 tasks done
perf: autobump bio/pyfastaq/replace_bases/environment.yaml
bio/pyfastaq/replace_bases
#4707
opened Nov 7, 2025 by
snakedeploy-bot
Bot
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perf: autobump bio/ngscheckmate/ncm/environment.yaml
bio/ngscheckmate/ncm
#4705
opened Nov 7, 2025 by
snakedeploy-bot
Bot
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feat: allow setting launchDir in params
Stale
#4638
opened Oct 9, 2025 by
tedil
Contributor
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fix: Support both reference.dict and reference.fasta.dict in GRIDSS wrappers
Stale
#4426
opened Aug 19, 2025 by
RitzelC
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feat: Add configurable protocol support to ensembl reference download
Stale
#2649
opened Feb 15, 2024 by
pettyalex
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1 task done
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