You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Add ID subfield to VCF v4.3 test file's structured header
In VCF v4.3 structured meta-information lines must have an ID subfield.
Split the value into identifier-like ID and text Description subfields
to demonstrate the structured benefit, though for a non-INFO/FORMAT/etc
line there's probably nothing requiring ID's value to be identifier-like.
Fixes#760.
This leaves the similar 4.1 and 4.2 files as is, as it is less clear
whether ID-less structured headers are merely discouraged there.
Copy file name to clipboardExpand all lines: test/vcf/4.3/passed/complexfile_passed_000.vcf
+1-1
Original file line number
Diff line number
Diff line change
@@ -41,7 +41,7 @@
41
41
##MYID=<ID=MINE,Number=1,Type=String,Description="Some random tag">
42
42
##MYID=<ID=MINE2,Number=1,Type=String,Description="Some random tag,with commas">
43
43
##AnalysisTitleQuotes="FINRISK: Whole-exome sequencing of Dietary, life style, and genetic determinants of obesity and metabolic syndrome (DILGOM)"
44
-
##AnalysisTitleBrackets=<"FINRISK: Whole-exome sequencing of Dietary, life style, and genetic determinants of obesity and metabolic syndrome (DILGOM)">
44
+
##AnalysisTitleStructured=<ID=FINRISK,Description="Whole-exome sequencing of Dietary, life style, and genetic determinants of obesity and metabolic syndrome (DILGOM)">
45
45
##AnalysisTitlePlain=FINRISK: Whole-exome sequencing of Dietary, life style, and genetic determinants of obesity and metabolic syndrome (DILGOM)
46
46
##source_20130015.4=vcf-annotate(r810) -c CHROM,POS,dbSNPmismatch,REF,ALT,- -a /nfs/users/nfs_p/pd3/sandbox/hapmap/dbSNP-b137/annots-rsIDs-dbSNPv137.2012-09-13.snp-indels.tab.gz -d key=INFO,ID=dbSNPmismatch,Number=0,Type=Flag,Description=The position in the dbSNP but alleles different -f /lustre/scratch106/projects/uk10k/BUILD/vrtrack_uk10k_cohort/REL-2012-06-02/calling/snps-indels/config/dbSNPmismatch.filt
0 commit comments