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feat: add class to generate pileup over AlignedSegments #445

feat: add class to generate pileup over AlignedSegments

feat: add class to generate pileup over AlignedSegments #445

Triggered via pull request July 15, 2025 15:26
Status Failure
Total duration 7m 43s
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ci.yaml

on: pull_request
Matrix: conda
Matrix: direct
Matrix: sdist
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21 errors, 4 warnings, and 8 notices
direct (macos, 3.11)
Process completed with exit code 1.
direct (macos, 3.12)
The operation was canceled.
direct (macos, 3.12)
The strategy configuration was canceled because "direct.macos_3_11" failed
direct (ubuntu, 3.11)
The operation was canceled.
direct (ubuntu, 3.11)
The strategy configuration was canceled because "direct.macos_3_11" failed
direct (ubuntu, 3.13)
The operation was canceled.
direct (ubuntu, 3.13)
The strategy configuration was canceled because "direct.macos_3_11" failed
direct (ubuntu, 3.10)
The operation was canceled.
direct (ubuntu, 3.10)
The strategy configuration was canceled because "direct.macos_3_11" failed
direct (ubuntu, 3.9)
The operation was canceled.
direct (ubuntu, 3.9)
The strategy configuration was canceled because "direct.macos_3_11" failed
direct (ubuntu, 3.12)
The operation was canceled.
direct (ubuntu, 3.12)
The strategy configuration was canceled because "direct.macos_3_11" failed
direct (ubuntu, 3.8)
The operation was canceled.
direct (ubuntu, 3.8)
The strategy configuration was canceled because "direct.macos_3_11" failed
direct (macos, 3.13)
The operation was canceled.
direct (macos, 3.13)
The strategy configuration was canceled because "direct.macos_3_11" failed
conda (ubuntu, 3.10)
Process completed with exit code 1.
sdist (macos, 3.10)
Process completed with exit code 1.
sdist (ubuntu, 3.10)
The operation was canceled.
sdist (ubuntu, 3.10)
The strategy configuration was canceled because "sdist.macos_3_10" failed
conda (ubuntu, 3.10)
/usr/share/miniconda/lib/python3.13/argparse.py:1258: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. subnamespace, arg_strings = subparser.parse_known_args(arg_strings, None)
conda (ubuntu, 3.10)
WARNING conda.cli.main_config:_set_key(453): Key auto_activate_base is an alias of auto_activate; setting value with latter
conda (ubuntu, 3.10)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
conda (ubuntu, 3.10)
/usr/share/miniconda/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
direct (macos, 3.11)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
direct (macos, 3.11)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
direct (macos, 3.12)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
direct (macos, 3.12)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
direct (macos, 3.13)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
direct (macos, 3.13)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
sdist (macos, 3.10)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
sdist (macos, 3.10)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520