Code

Bugfix: viscosity outputs#207

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jcoulter12 merged 40 commits intodevelopphoebe-team/phoebe:developfrom viscosityFixphoebe-team/phoebe:viscosityFixCopy head branch name to clipboardDec 30, 2023

+2,905-1,912

Commits

Commits on Sep 19, 2023

• draft fixes to the viscosity calculations

  jcoulter12

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  2279c6e

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• fix the viscosity unit conversion value in constants

  jcoulter12

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  bfdf721

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• drafts of unified print and outputToJSON functions for the viscosities

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  f8ea7f5

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Commits on Sep 20, 2023

• electron viscosity should work now baring final test

  jcoulter12

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  6d3d38d

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• move special eigenvector checks into helper functions and further cleanup

  jcoulter12

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  5d3291f

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• further cleanup of print statements

  jcoulter12

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  b488e04

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• [ci skip] also skip theta_e in electron viscosity

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  fc39129

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Commits on Oct 12, 2023

• potential minor bugfix for longrange correction to phonon frequencies

  jcoulter12

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  a012d1e

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• Merge remote-tracking branch 'origin/develop' into lotoFix

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  dc51466

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Commits on Oct 13, 2023

• merge in develop branch changes

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  42b7c44

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• vi

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  56fa002

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• move two minor functions for getting local states to the scattering matrix object

  jcoulter12

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  5598ce9

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• move phonon viscosity class around so that special quantities for relaxons are computed up front

  jcoulter12

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  d7e735b

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• add a generic funciton to write D and W to file

  jcoulter12

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  a74a781

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• add output functions for real space quantities to phonon transport app

  jcoulter12

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  340c58d

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Commits on Oct 14, 2023

• try to apply SI units to output of A and C

  jcoulter12

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  d097987

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Commits on Oct 16, 2023

• update the band structure test to use a grid that avoids high symmetry points, to avoid issues with slightly different eigenvectors coming out when Eigen is used with OMP threads

  jcoulter12

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  4b5c1a1

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• fix units on specific heat

  jcoulter12

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  9158538

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• fix units on specific heat

  jcoulter12

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  ea82085

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• Merge remote-tracking branch 'origin/lotoFix' into viscosityFix

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  3fbb795

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• fix the units on Ai output to real space solver file

  jcoulter12

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  59c1e46

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• add reference checks for phonon relaxons solvers

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  c335021

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Commits on Oct 17, 2023

• update a bunch of reference files for testing that had become off by a tiny difference

  jcoulter12

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  b80f471

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• update run_check scripts to be far more robust and sensitive, plus add several quantities which were earlier untracked, including viscosity

  jcoulter12

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  9940078

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• add a few more places where diff < tol needed to be abs(diff)

  jcoulter12

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  a2eb1a0

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• update rta electron viscosity ref file

  jcoulter12

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  74d93db

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• add script to run build and test locally

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  f90785b

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• add a tol definition to epa run_check python script

  jcoulter12

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  7d681f2

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• [skip ci] add some checks for none type in lifetimes

  jcoulter12

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  e9b4a67

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Commits on Oct 18, 2023

• overhaul electron and phonon viscosity outputs so that many functions are standardized into the viscosity io helper file

  jcoulter12

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  b143457

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• simplify a previously cryptic normalization convention on phi

  jcoulter12

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  4221f09

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• add citation to second relaxons paper

  jcoulter12

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  11d0e19

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• fix units on Du

  jcoulter12

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  eb2a4a5

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• update the reference for real space coeffs

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  6afa12f

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Commits on Oct 19, 2023

• try to avoid a failure in the ci

  jcoulter12

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  b4a0e41

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• explicitly set C = 0 before calculating it

  jcoulter12

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  3fd5bab

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• prepare for use of only the upper triangle in viscosity functions

  jcoulter12

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  1223b0c

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Commits on Oct 20, 2023

• add an extra space for better printing

  jcoulter12

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  fd329cd

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Commits on Dec 29, 2023

• Merge remote-tracking branch 'origin/develop' into viscosityFix

  jcoulter12

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  b63319b

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• remove factor of 1/2 in phonon loto splitting calculation, to be readded later in another branch fix

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  c4ce081

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