Skip to content

Clarify BED file requirements in README #39

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
pvanheus wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Clarify BED file requirements in README #39

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ The repository includes a top-level machine readable [index](https://github.com/
A scheme definition has three components:

1. A reference sequence (e.g. [`reference.fasta`](https://github.com/pha4ge/primer-schemes/blob/main/schemes/artic-sars-cov-2/400/v4.1.0/reference.fasta))
2. A seven column Primal Scheme-like BED file of primer sequences & coordinates (e.g. [`primer.bed`](https://github.com/pha4ge/primer-schemes/blob/main/schemes/artic-sars-cov-2/400/v4.1.0/primer.bed))
2. A seven column Primal Scheme-like BED file of primer sequences & coordinates (e.g. [`primer.bed`](https://github.com/pha4ge/primer-schemes/blob/main/schemes/artic-sars-cov-2/400/v4.1.0/primer.bed)) that complies with the formatting specified in the [ARTIC primer scheme specification](https://github.com/artic-network/primerscheme-specs/blob/main/pdf/primerscheme.pdf)
3. A metadata file in JSON format adhering to a [schema](https://github.com/pha4ge/primaschema/blob/main/src/primaschema/schema/info.yml) (e.g. [`info.json`](https://github.com/pha4ge/primer-schemes/blob/main/schemes/artic-sars-cov-2/400/v4.1.0/info.json))


Expand Down
Loading