Public Health Alliance for Genomic Epidemiology
Popular repositories
-
hAMRonization
hAMRonization PublicParse multiple Antimicrobial Resistance Analysis Reports into a common data structure
-
pipeline-resources
pipeline-resources PublicBioinformatics Pipeline and Visualization resources
-
SARS-CoV-2-Contextual-Data-Specification
SARS-CoV-2-Contextual-Data-Specification PublicCollection template and associated materials for SARS-CoV-2 metadata
-
hAMRonization_workflow
hAMRonization_workflow PublicHarmonization of AMR predictor tool outputs
-
-
Repositories
-
- hAMRonization Public
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
-
-
- Wastewater_Contextual_Data_Specification Public Forked from cidgoh/Wastewater_Contextual_Data_Specification
A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.
-
- SARS-CoV-2-Contextual-Data-Specification Public
Collection template and associated materials for SARS-CoV-2 metadata
- contextual_data_QC_tags Public
Standardized attributes for labelling sequence datasets with known quality control issues
-
- minimal-pathogen-agnostic-contextual-data-specification Public
An international minimal metadata standard for public health and One Health genomic surveillance.
