Repositories list

• imputationserver2

  Public
  Imputation Server 2 workflow to facilitate genotype imputation at scale.

  Nextflow

  •

  MIT License

  •13•0•0•0•Updated Mar 13, 2026Mar 13, 2026

• cloudgene3

  Public
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.

  Java

  •

  MIT License

  •8•0•0•0•Updated Mar 12, 2026Mar 12, 2026

• bravo_api

  Public
  Server side data processing and retrieval endpoints for BRAVO

  Python

  •

  MIT License

  •2•1•16•0•Updated Mar 4, 2026Mar 4, 2026

• bravo_vue

  Public
  BRAVO's Vue JS based UI.

  Vue

  •0•0•13•19•Updated Mar 4, 2026Mar 4, 2026

• imputationserver-utils

  Public
  Java

  •

  MIT License

  •4•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• colocus-ui-vue3

  Public

  statgen/colocus-ui-vue3’s past year of commit activity
  JavaScript

  •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• tis-v2-cli

  Public

  statgen/tis-v2-cli’s past year of commit activity
  Provides utilities to access the TOPMed Imputation Server programmatically.

  Python

  •0•0•1•0•Updated Jan 30, 2026Jan 30, 2026

• ansible-bravo-deploy

  Public
  Anisble deployment roles and playbook for BRAVO API and UI

  Jinja

  •1•0•1•0•Updated Jan 16, 2026Jan 16, 2026

• bravo_data_prep

  Public
  Work flows and tools to create data that backs the BRAVO API.

  C++

  •

  MIT License

  •2•0•8•0•Updated Jan 5, 2026Jan 5, 2026

• colocus

  Public
  A browser for display of fine-mapped genetic signals and their colocalizations

  geneticsstatistical-geneticscolocalization+ 1

  geneticsstatistical-geneticscolocalizationfine-mapping

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

• tis-v2-docs

  Public
  User-facing documentation for the TOPMed Imputation Server v2 (Nextflow edition)

  0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

• fipip_manuscript

  Public
  Manuscript source files to reproduce fiPIP manuscript display items

  Jupyter Notebook

  •0•0•0•0•Updated Nov 24, 2025Nov 24, 2025

• fipip

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

• encore

  Public
  Encore Analysis Server

  Python

  •

  GNU Affero General Public License v3.0

  •6•13•0•5•Updated Nov 18, 2025Nov 18, 2025

• imputationserver

  Public
  TOPMED Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and produc…

  Java

  •

  GNU Affero General Public License v3.0

  •49•6•0•0•Updated Oct 20, 2025Oct 20, 2025

• topmed-methylation-qtl

  Public
  PIpeline for TOPMed methylation QTL analysis.

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 11, 2025Oct 11, 2025

• savant

  Public
  Sparse Allele Vector AssociatioN Tool

  C++

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Oct 11, 2025Oct 11, 2025

• pheweb

  Public
  A tool to build a website to browse hundreds or thousands of GWAS.

  Python

  •

  MIT License

  •74•193•39•2•Updated Sep 11, 2025Sep 11, 2025

• bravo-infrastructure

  Public
  Provisioning and deployment of example BRAVO vignette.

  HCL

  •0•0•1•0•Updated Aug 26, 2025Aug 26, 2025

• RNA-seq-tracking

  Public
  Tracks TOPMed OMICS qc progress

  PHP

  •0•1•0•0•Updated Jul 10, 2025Jul 10, 2025

• locuszoom-api

  Public
  Flask server code for LocusZoom APIs

  Python

  •

  MIT License

  •3•1•0•0•Updated Jul 7, 2025Jul 7, 2025

• Minimac4

  Public
  C++

  •

  GNU General Public License v3.0

  •26•77•51•2•Updated Jun 4, 2025Jun 4, 2025

• locuszoom

  Public
  A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

  gwaslocuszoomgwas-tools+ 2

  gwaslocuszoomgwas-toolsgwas-summary-statisticslocuszoom-plot

  JavaScript

  •

  MIT License

  •32•165•15•4•Updated May 9, 2025May 9, 2025

• localzoom

  Public
  Make interactive LocusZoom plots from a local GWAS file

  gwasgwas-cataloglocuszoom+ 4

  gwasgwas-cataloglocuszoomgwas-pipelinegwas-toolsgwas-summary-statisticslocuszoom-plot

  Vue

  •

  MIT License

  •5•10•0•9•Updated May 9, 2025May 9, 2025

• locuszoom-hosted

  Public
  A web service to upload and share GWAS results with LocusZoom.js

  gwaslocuszoomgwas-pipeline+ 3

  gwaslocuszoomgwas-pipelinegwas-toolsgwas-summary-statisticslocuszoom-plot

  Python

  •

  MIT License

  •0•1•13•11•Updated May 8, 2025May 8, 2025

• zorp

  Public
  A simple GWAS parser + CLI

  pythongwasconversion+ 5

  pythongwasconversionparserslocuszoomgwas-pipelinegwas-toolsgwas-summary-statistics

  Python

  •

  MIT License

  •0•1•2•0•Updated May 7, 2025May 7, 2025

• filefetcher

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 6, 2025May 6, 2025

• LDServer

  Public
  Fast API server for calculating linkage disequilibrium

  genetics

  genetics

  Linker Script

  •

  GNU General Public License v3.0

  •2•20•3•4•Updated Apr 24, 2025Apr 24, 2025

• ruth

  Public
  Robust Unified Hardy-Weinberg Equilibrium Test

  C++

  •

  Apache License 2.0

  •2•6•7•0•Updated Apr 8, 2025Apr 8, 2025

• terraform-aws-imputation-server

  Public
  A set of Terraform Modules for deploying an imputation server on AWS

  awsbioinformaticsterraform+ 1

  awsbioinformaticsterraformterraform-modules

  HCL

  •

  Apache License 2.0

  •2•1•0•0•Updated Mar 26, 2025Mar 26, 2025