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    43 repositories

    • bco-rag

      Public
      BioCompute Object Retrieval-Augmented Generation Tool
      Python
      •
      MIT License
      •0•0•6•0•Updated Dec 16, 2024Dec 16, 2024

    • bco_api

      Public
      The master repository for the JSON API.
      apijson
      Python
      •
      MIT License
      •2•2•6•0•Updated Oct 31, 2024Oct 31, 2024

    • portal_userdb

      Public
      JavaScript
      •1•1•99•2•Updated Oct 31, 2024Oct 31, 2024

    • pdf_to_bco_script

      Public
      A preliminary script for converting pdfs into biocompute objects. Accuracy varies from section to section.
      0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • playbook-partnership

      Public
      A repository for playbook partnership collaboration.
      TypeScript
      •
      Other
      •18•0•9•0•Updated Aug 12, 2024Aug 12, 2024

    • dnanexus

      Public
      Python
      •
      MIT License
      •2•0•1•1•Updated Aug 2, 2024Aug 2, 2024

    • linked-data-hub

      Public
      Linked Data Hub Schema and Script
      Python
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • BCO_Documentation

      Public
      Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
      workflowbioinformaticsstandardizationscience-communicationhts-computations
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •12•16•9•0•Updated Jul 22, 2024Jul 22, 2024

    • w3id.org

      Public
      Website source code for w3id.org
      HTML
      •1.2k•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • bco2markdown

      Public
      Code for converting a BCO to a Markdown file
      Python
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • biocompute-object-llm

      Public
      BioCompute Object Assistant
      HTML
      •2•1•0•0•Updated May 9, 2024May 9, 2024

    • Mockup

      Public
      0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1k•2•10•0•Updated Feb 14, 2024Feb 14, 2024

    • bco-ro-crate

      Public
      Tutorial and specification for packaging IEEE 2791-2020 BCOs as RO-Crate Research Objects
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•1•Updated Dec 20, 2023Dec 20, 2023

    • portal

      Public archive
      BCO Portal rebuild.
      JavaScript
      •
      MIT License
      •0•3•30•0•Updated Mar 8, 2023Mar 8, 2023

    • bcotool

      Public
      Python
      •
      MIT License
      •5•2•6•3•Updated Feb 22, 2023Feb 22, 2023

    • galaxy_server

      Public
      Configuration for Galaxy Installation with Ansible in AWS for the BioCompute Project
      Jinja
      •
      MIT License
      •0•0•1•0•Updated Feb 7, 2023Feb 7, 2023

    • extension_domain

      Public
      extension schema for BCO
      1•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • userdb

      Public archive
      Python
      •
      MIT License
      •0•1•2•0•Updated Jan 2, 2023Jan 2, 2023

    • -Tool-Type-Dictionary

      Public
      1•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • library

      Public
      Standard library to support the IEEE 2791-2020 standard.
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 31, 2022May 31, 2022

    • bco_editor

      Public archive
      A web application that can be used to create and edit BioCompute objects based on BioCompute schema described in the BCO specification document.
      web-applicationbiocomputebiocompute-objectsbco
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •7•2•36•6•Updated Apr 22, 2022Apr 22, 2022

    • bco-public-website

      Public
      A Hugo-based deployment of biocomputeobject.org
      biologystandardsbioinformatics-pipelineworkflowsngs-analysisscience-communicationhts-computationsregulatory-genomicshigh-th
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•6•0•Updated Sep 10, 2021Sep 10, 2021

    • bco-ro-example-chipseq

      Public
      Packaging a IEEE 2791 described BioCompute Object as RO-Crate, using nf-core/chipseq as example
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•4•0•0•Updated May 18, 2021May 18, 2021

    • biocompute

      Public
      Create and Manipulate BioCompute Objects
      R
      •3•0•0•0•Updated Feb 14, 2021Feb 14, 2021

    • examples

      Public archive
      repo for BCO example flat files
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jan 10, 2021Jan 10, 2021

    • bco-app

      Public
      BCO App by Seven Bridges
      R
      •
      GNU Affero General Public License v3.0
      •4•1•0•0•Updated Dec 9, 2020Dec 9, 2020

    • biocompute-objects.github.io

      Public
      Website redirection
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 29, 2020Oct 29, 2020

    • RVDB-curation

      Public
      This wrapper enables the HPC execution of FDA DB curation and list all the step in a programming language style.
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Sep 3, 2020Sep 3, 2020

    • BioComputeObjectCreatorCommandLineTool

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 27, 2020Aug 27, 2020