-
Notifications
You must be signed in to change notification settings - Fork 6
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
9aff040
commit 901bfd9
Showing
2 changed files
with
122 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,54 @@ | ||
--- | ||
tags: Tuesday | ||
--- | ||
|
||
# 2024-03-19 | ||
|
||
Attending: Will, JM, Tom, Muhanad, Frances, Dom, Khaled, Kyle, Petr, Andreas, Maadhav, Seb, Kevin, Chris, Erin | ||
|
||
Start: 2:00 pm UK | ||
|
||
## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) | ||
|
||
## Project Status | ||
|
||
(2-3 minutes each) | ||
|
||
- IDR (Frances): | ||
- rocky linux 9 deployed on idr-next | ||
- idr0151 in progress on pilot | ||
- NGFF - David opened a PR to add s3 direct access | ||
- Will - initial test looks good (faster) | ||
- ansible role tagged but not released yet (won't redploy again with the release) | ||
|
||
- OMERO | ||
- merge-ci updated to Rocky linux 9. NB: System is not reachable between 7-8am (UK) every tuesday | ||
- Andres: reviewing web PRs | ||
|
||
- Bio-Formats | ||
- Seb: Bio-Formats 7.3.0 planned for mid April | ||
- JDK 21 support is in | ||
- few external contributions | ||
- Ongoing DICOM work | ||
|
||
- NGFF | ||
- Josh: proposed community call about standalone labels. https://forum.image.sc/t/save-a-single-labels-dataset-into-an-ome-zarr/93505/21 | ||
|
||
- GerBI | ||
- | ||
|
||
- Glencoe | ||
- Chris: OMERO.server PRs open for review - feedback appreciated | ||
- Zarr PixelBuffer repo preparing for public open-source | ||
- JM: bioformats2raw Docker repo: would be good to automate update if we keep it | ||
|
||
- Community | ||
- proposed Panama trip, 2nd week of June | ||
|
||
## AOB | ||
|
||
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) | ||
|
||
## Main Topic | ||
|
||
(20-25 minutes plus 15 minutes questions max) |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,68 @@ | ||
--- | ||
tags: Tuesday | ||
--- | ||
|
||
# 2024-03-26 | ||
|
||
Attending: Will, JM, Petr, Frances, Dom, June, Khaled, Seb, Melissa, Tom, Andreas, Kyle, Chris, | ||
|
||
Start: 2:00 pm UK | ||
|
||
## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview) | ||
|
||
## Project Status | ||
|
||
(2-3 minutes each) | ||
|
||
- IDR | ||
- idr-next now using Rocky Linux 9. Testing looks good. Will be used for next release | ||
- idr0151 testing on pilot, then will import into idr-next for release, approx 2 weeks. | ||
- Will: applying bfoptions updates for ZarrReader on all ngff data | ||
- NGFF: Khaled: issues with updating ZarrReader.jar on microservices. | ||
|
||
- OMERO | ||
- PR in progress for long-running processes on omero-web. | ||
- web meeting on Friday cancelled (day off) | ||
- Seb: Proposal for updating OMERO to remove path/name to original files in Pixels table, fix ordering of Fileset Files. https://github.com/ome/openmicroscopy/issues/6380 | ||
- microservices issues caused by this | ||
- also NGFF Fileset updates have to deal with this | ||
|
||
- Bio-Formats | ||
- Cancel formats meeting on Monday | ||
- 8th April release planning - review 7.3.0 | ||
|
||
- NGFF | ||
- ome-zarr-py: couple of external PRs | ||
- upcoming call 3rd April on standalone label images (and collections?) | ||
|
||
- GerBI | ||
- Various PRs open: KV-Pair scripts: writing tests now | ||
- Tagsearch PR open: included in merge-ci deployment now | ||
|
||
- Glencoe | ||
- Server PRs open and available to review | ||
- Reactivated Windows tests for omero-py | ||
- [Ice wheels for Windows](https://github.com/glencoesoftware/zeroc-ice-py-win-x86_64/releases/tag/20240325) py3.8 -> py3.12. Release blog post in preparation | ||
- Glencoe attending several conferences/meetings over next few weeks, presenting posters etc. | ||
|
||
- Community | ||
- OME Community Meeting. | ||
- May 29-31 Dundee | ||
- Several speakers confirmed (large image repos). | ||
- preparing to announce on website forum etc.. | ||
- busy time for meetings | ||
- Wellcome BioImaging grant prep and others. Will need IDR stats etc. | ||
- | ||
|
||
|
||
## AOB | ||
|
||
- OME HPC Storage Outage | ||
- April 1 5pm UK - April 5. | ||
- Panama trip going ahead | ||
|
||
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled) | ||
|
||
## Main Topic | ||
|
||
(20-25 minutes plus 15 minutes questions max) |