Add 2024-03-05.md

2024/2024-03-05.md

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+---
+tags: Tuesday
+---
+
+# 2024-03-05
+
+Attending: Will, David, Dom, June, Frances, Khaled, Oumou, Muhanad, Kyle, David S, Melissa, Seb, Kevin, Chris, Erin, 
+
+Start: 2:00 pm UK
+
+## Accepting minutes from [last meeting](https://hackmd.io/team/ome?nav=overview)
+
+## Project Status
+
+(2-3 minutes each)
+
+- IDR
+    - prod120: idr0154, idr0155 release later today
+    - Will: [testing perf of NGFF](https://github.com/IDR/idr-metadata/issues/687) on idr-testing:
+        - Rendering images is much faster when data is on local disk (~0.4 secs) compared with S3 (~2 secs). 
+    - David looking at reading from s3 directly
+
+- OMERO
+    - Chris: preparing security blog post
+
+- Bio-Formats
+    - Melissa: Java 21 tests now running, surprisingly passing!
+
+- NGFF
+
+- GerBI
+
+- Glencoe (Chris)
+    - OMERO.web items ongoing:
+    - HCS thumbnail refreshing
+    - OMERO.figure - no prevention of max-intensity projection
+    - single sign-on
+    - Erin: Webknosses chunking discussion blog post https://www.glencoesoftware.com/blog/2024/03/01/data-structure-ome-zarr.html
+    - poster https://www.glencoesoftware.com/blog/2024/03/04/SLAS.html
+
+- Community
+    - Indonesia trip in progress!
+    - OME meeting planning ongoing. Dates TBC
+    - 
+
+## AOB
+
+(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
+
+## Main Topic
+
+Microscope metrics:
+Julio Mateos Langerak, Oumou
+
+ - Imaging to check health of the microscope
+ - Data is often kept in inaccessible locations
+ - Idea is to use OMERO to store this data
+ - Now have finance to implement this
+ - Ease of use, FAIRness etc
+ - Encourage core facility staff to use OMERO for their own data
+ - Benefits of training etc
+ - Packages:
+     - microscope-metrics: algorithms
+     - schema: Link-ml
+     - microscope-metrics-omero: Interface with OMEREO
+ - Seb: who will want to access the data? Users?
+     - Julio: yes. Publish QC data alongside experimental data
+ - Mapping:
+     - OMERO group -> microscope
+     - Project -> analysis over time
+     - Dataset
+