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25 Open 40 Closed
25 Open 40 Closed
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Issues list

Implement gene regulatory network analyses enhancement New feature or request
#119 opened Oct 27, 2024 by nictru
@MeyerhoeferNicolai
Create nf-core module for SCDS enhancement New feature or request good first issue Good for newcomers
#118 opened Oct 27, 2024 by nictru
@cakirb
Create nf-core module for Scrublet enhancement New feature or request good first issue Good for newcomers
#116 opened Oct 27, 2024 by nictru
@pavlemarinkovic
Create nf-core module for DecontX enhancement New feature or request good first issue Good for newcomers
#113 opened Oct 27, 2024 by nictru
@lea-lenhardtackovic
Create nf-core module for SoupX enhancement New feature or request good first issue Good for newcomers
#112 opened Oct 27, 2024 by nictru
1
@nictru @LeonHafner
Move preprocessing modules to nf-core/modules enhancement New feature or request
#109 opened Oct 27, 2024 by nictru
@nictru
Improve preprocess_only implementation enhancement New feature or request
#108 opened Oct 27, 2024 by nictru
@albertulll
4
Implement cell-cell interaction analyses enhancement New feature or request
#107 opened Oct 27, 2024 by nictru
Allow doublet detection score calculation without actually removing doublets enhancement New feature or request
#106 opened Oct 27, 2024 by nictru
Add option for per-sample specification of doublet detection thresholds enhancement New feature or request
#88 opened Sep 13, 2024 by nictru
MultiQC fails with latest dev release bug Something isn't working
#83 opened Sep 6, 2024 by alexblaessle
Implement SingleR cell type assignment enhancement New feature or request
#24 opened Jun 13, 2024 by nictru Stable transcriptomics
1
Implement scPred cell type assignment enhancement New feature or request
#23 opened Jun 13, 2024 by nictru Stable transcriptomics
Implement Azimuth cell type assignment enhancement New feature or request
#22 opened Jun 13, 2024 by nictru Stable transcriptomics
Implement cell type assignment methods enhancement New feature or request overview Meta-issue for tracking related issues
#20 opened Jun 13, 2024 by nictru Stable transcriptomics
@nictru
3
Implement DoubletFinder doublet detection enhancement New feature or request Needs conda
#18 opened Jun 13, 2024 by nictru Stable transcriptomics
Implement DoubletDecon doublet detection enhancement New feature or request Needs conda
#17 opened Jun 13, 2024 by nictru Stable transcriptomics
Implement doublet detection methods enhancement New feature or request overview Meta-issue for tracking related issues
#14 opened Jun 13, 2024 by nictru Stable transcriptomics
@nictru
1
Implement integration benchmarking using scIB enhancement New feature or request
#13 opened Jun 13, 2024 by nictru Stable transcriptomics
@manogenome
3
Implement LIGER integration enhancement New feature or request
#11 opened Jun 13, 2024 by nictru Stable transcriptomics
Implement integration methods enhancement New feature or request overview Meta-issue for tracking related issues
#7 opened Jun 13, 2024 by nictru Stable transcriptomics
@nictru
2
Implement pathway analysis using decoupler enhancement New feature or request
#6 opened Jun 13, 2024 by nictru Stable transcriptomics
3
Implement pathway analysis using WebGestaltR enhancement New feature or request
#5 opened Jun 13, 2024 by nictru Stable transcriptomics
Implement pathway analysis using EnrichR enhancement New feature or request
#4 opened Jun 13, 2024 by nictru Stable transcriptomics
2
Implement pathway analysis enhancement New feature or request overview Meta-issue for tracking related issues
#3 opened Jun 13, 2024 by nictru Stable transcriptomics
@nictru
ProTip! Updated in the last three days: updated:>2024-12-21.